G59478


Basic Information

Item Value
gene id G59478
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4950300 ~ 4950651 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU70374
TTCTTGGTGCCGATTTCTTCCCTTTCTCTGAACACTGTATTCTTTGTATACTGCCCCTGTGGCTAGCGGCTAACAACAGACGTGGAGCCCGTGTGACTGGCATAATGAACTACTCGGCCACTCAACTGATAGAATATAACAACCATAACATTCCATCATGTATATCAGTCATTAAAGAACTTGGACTCCTACGTCGTCCCCGGTATATCCACAGAAGCTCTCGGCGAAAGTTTGCTTACTCCCGGTCTGGTAACGAAATACCTTCCGTTTGGGCAGCTGTGCGCCCTGTAGCATCTCTTCCACGTCATCAGAGAACTGATACTCTGTGGATTAGTAGCACTGGAGATACTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70374 True 352 lncRNA 0.47 1 4950300 4950651

Neighbor

gene id symbol gene type direction distance location
LOC117597060 NA coding upstream 15382 4922651 ~ 4934918 (+)
LOC113547295 LOC108268250,LOC108441957,LOC103047026,LOC105898799 coding upstream 36678 4896968 ~ 4913622 (+)
si:ch211-188c16.1 LOC108268214 coding upstream 55877 4879800 ~ 4894423 (+)
LOC113547214 c8b,LOC108268235,LOC105898377,LOC107562846 coding upstream 83889 4805654 ~ 4866411 (+)
LOC113547242 LOC108268241 coding upstream 161047 4774186 ~ 4789253 (+)
LOC117597061 LOC108261662 coding downstream 94477 5045128 ~ 5050075 (+)
LOC113547260 LOC108261847,LOC108267254 coding downstream 201664 5152315 ~ 5178390 (+)
LOC117597179 NA coding downstream 213415 5164066 ~ 5164624 (+)
LOC113547246 LOC108267254,LOC108261847,LOC108268247,LOC108262218,LOC108268074,LOC108268075,LOC108268261 coding downstream 240425 5191076 ~ 5191745 (+)
LOC113547266 NA coding downstream 245024 5195675 ~ 5209761 (+)
G59329 NA non-coding upstream 251505 4677167 ~ 4698795 (+)
G59343 NA non-coding upstream 278840 4670980 ~ 4671460 (+)
G59342 NA non-coding upstream 280217 4669863 ~ 4670083 (+)
G59340 LOC108415261,LOC108268240,LOC108268232,LOC108268231,LOC108441967,LOC108262306 non-coding upstream 283845 4666012 ~ 4666455 (+)
G59338 LOC108268240 non-coding upstream 285834 4663611 ~ 4664466 (+)
G59479 NA non-coding downstream 1720 4952371 ~ 4952598 (+)
G59483 NA non-coding downstream 7411 4958062 ~ 4958314 (+)
G59521 LOC108268222,LOC108268223 non-coding downstream 61269 5011920 ~ 5017802 (+)
LOC113547270 NA non-coding downstream 313365 5264016 ~ 5266014 (+)
G59663 NA non-coding downstream 351231 5301882 ~ 5369456 (+)
G59366 ube3c other upstream 241902 4707442 ~ 4708398 (+)
LOC117597167 NA other upstream 297179 4650477 ~ 4653121 (+)
shrprbck1r LOC108268220,LOC108414001,LOC107739381,LOC107556071,LOC107653293,LOC107590993 other upstream 397262 4532921 ~ 4553038 (+)
LOC117597054 LOC108261095,LOC108261462,LOC108261092 other upstream 556295 4049152 ~ 4394005 (+)
LOC113547236 LOC108261305,LOC108261462,LOC108268217 other upstream 653835 4290618 ~ 4296465 (+)
G59492 LOC108268230,LOC108268219 other downstream 23544 4974195 ~ 5014813 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other downstream 228903 5179554 ~ 5189713 (+)
LOC113547289 LOC108267851 other downstream 437717 5388368 ~ 5391829 (+)
LOC113547291 LOC108268023 other downstream 629145 5579796 ~ 5596225 (+)
trnat-ugu_2 NA other downstream 1192881 6143532 ~ 6143802 (+)

Expression


Co-expression Network