G59479


Basic Information

Item Value
gene id G59479
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4952371 ~ 4952598 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU70375
ACCTGCTGATGACAGCTGATGCTGGTTCACCATCACTTCTTGTCCTTTTGGATCTTTCTGCAGCGTTCGACACCGTTGATCACGGTATACTTCTCAACAGGCTACACCACTCCGTTGGACTTAATAACACTGTCTTGCGTTGGTTTGAGTCATACCTTGCAGACAGATCTGAATTTGTGGCCATGGGAAGCTCAAGGTCCCGTTCACATGCTGTTAGATGCGTTCCAC

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system

RNA

RNA id representative length rna type GC content exon number start site end site
TU70375 True 228 lncRNA 0.48 1 4952371 4952598

Neighbor

gene id symbol gene type direction distance location
LOC117597060 NA coding upstream 17453 4922651 ~ 4934918 (+)
LOC113547295 LOC108268250,LOC108441957,LOC103047026,LOC105898799 coding upstream 38749 4896968 ~ 4913622 (+)
si:ch211-188c16.1 LOC108268214 coding upstream 57948 4879800 ~ 4894423 (+)
LOC113547214 c8b,LOC108268235,LOC105898377,LOC107562846 coding upstream 85960 4805654 ~ 4866411 (+)
LOC113547242 LOC108268241 coding upstream 163118 4774186 ~ 4789253 (+)
LOC117597061 LOC108261662 coding downstream 92530 5045128 ~ 5050075 (+)
LOC113547260 LOC108261847,LOC108267254 coding downstream 199717 5152315 ~ 5178390 (+)
LOC117597179 NA coding downstream 211468 5164066 ~ 5164624 (+)
LOC113547246 LOC108267254,LOC108261847,LOC108268247,LOC108262218,LOC108268074,LOC108268075,LOC108268261 coding downstream 238478 5191076 ~ 5191745 (+)
LOC113547266 NA coding downstream 243077 5195675 ~ 5209761 (+)
G59478 NA non-coding upstream 1720 4950300 ~ 4950651 (+)
G59329 NA non-coding upstream 253576 4677167 ~ 4698795 (+)
G59343 NA non-coding upstream 280911 4670980 ~ 4671460 (+)
G59342 NA non-coding upstream 282288 4669863 ~ 4670083 (+)
G59340 LOC108415261,LOC108268240,LOC108268232,LOC108268231,LOC108441967,LOC108262306 non-coding upstream 285916 4666012 ~ 4666455 (+)
G59483 NA non-coding downstream 5464 4958062 ~ 4958314 (+)
G59521 LOC108268222,LOC108268223 non-coding downstream 59322 5011920 ~ 5017802 (+)
LOC113547270 NA non-coding downstream 311418 5264016 ~ 5266014 (+)
G59663 NA non-coding downstream 349284 5301882 ~ 5369456 (+)
G59725 NA non-coding downstream 476683 5429281 ~ 5429622 (+)
G59366 ube3c other upstream 243973 4707442 ~ 4708398 (+)
LOC117597167 NA other upstream 299250 4650477 ~ 4653121 (+)
shrprbck1r LOC108268220,LOC108414001,LOC107739381,LOC107556071,LOC107653293,LOC107590993 other upstream 399333 4532921 ~ 4553038 (+)
LOC117597054 LOC108261095,LOC108261462,LOC108261092 other upstream 558366 4049152 ~ 4394005 (+)
G59492 LOC108268230,LOC108268219 other downstream 21597 4974195 ~ 5014813 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other downstream 226956 5179554 ~ 5189713 (+)
LOC113547289 LOC108267851 other downstream 435770 5388368 ~ 5391829 (+)
LOC113547291 LOC108268023 other downstream 627198 5579796 ~ 5596225 (+)
trnat-ugu_2 NA other downstream 1190934 6143532 ~ 6143802 (+)

Expression


Co-expression Network