LOC117597188 (LOC108262218,LOC108262433)


Basic Information

Item Value
gene id LOC117597188
gene name LOC108262218,LOC108262433
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4928360 ~ 4945021 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU70504
TTTTCTCCAGAGTTTCCCGTCTCTTGTGGACACTCCTGGATCTGCAGACTTACACTCCATCAGGCTCAgtcctttcctctctcttgaggATGTAACAGCATTTGTGTCTCAACTGAGGGACAACGTGGAAAAATTCTGCTATGAGGAGTTCAGAATGGTATCAAATGCAGTAAAAGAAATCCAGATTATTCCACTTCCTGAACCCAAAAGCAGAGAAGAGTTTC
>TU70512
GTCATAGGGAGAAGTGCAGTTAATGGCTGCTCCATCCTATCTCTTAGATTTTTAACTTCCACCACACTGGAATTAACTGAATtgtgagttttgtttttatctagAAGCAGCTGTTGAAGACACAGAGAAAATGCCAACAGAGAATCTTGGATAGAGTGAAGGAGCATCAGGAGCTAACAGAAGCTGTGGAGTTTTATGAGCGCTCTGCACAAAGAACAGTGCAGGAAAGTGAGAGGATCTTTACTGATCTGATCAAATCCATTGAGAGAAGACGCAGTGAGGTGACACGgctgatcagagctcaggagaaagCTGCAGTGGGTCGAGCTGAAGAAGTCATG
>XM_034304066.1
GCTATTCAGCTCCTTAATAGACACAGTTAATGAGTTAGCTACAGCAGGTGTGTGCTCTTTATGAGCAGTATGCAGTCTTACAGGCCGAGCAGACACACAGTGGATATTTGTACTTCCTATTTTCTGGTagagacacacactctcccatTTCCTCCAGCCCTTTCTCTCCACTCCCTCTCCCTCTTGCTCTTAGCCACTCCTGTTCACTTCAACAGAAATGAAACTAAAACTGATCATTTCCCTCGGTGTGTGTGAAACTGACTTAGCTGTCTCAAGATTTTTCGCCCTTCTTGTTACTTTTTGATTGACATATCgtatgtcttttctttttctgtatacctgagcaaaataaaatggcagAGACTAATATTTCAGTGGCTCAGGATCAGTTCAGCTGTTCAATCTGTCTGGATCTACTCAAGGATCCAGTGACTATTCTCTGTGGACACAGTTTCTGTATGGTGTGTATTAATGGCTGCTGGGATCAGGAGGATCAGAAGGGAGTCTATAGCTGTCCTCAGTGTAAAGAAACCTTCACTCCAAGACCTGTTGTGAGTAAAAATGCCATTCTGGCTgaagttactgagaaactaaAGACAGAACTCCGAGCTACACGTCCTGTTCACTGTTCAACTGTAAGTGAAGCTGTGAAATGTGATTCCTGCACTGGGAGAAACTCCAAAGCCATCAAGTCCTGTCTGGTGTGTCTGGCCTCTTTCTGTGAAACTCACCTCCAGCCTCACTATGAATCTCCTGCCTTTAAGAAGCACAAGCTGGTCGAAGCCTCCAGACGACTCCAGGAGCAGATCTGCTCTCAGCATGACAAACTGCTGGAGGTTTACTGTCGCACTCACCAGCAGTGTATCTGCATGTTGTGTATGTTAGATAAACATAAAGGACATGATACAGTATCAGCTGCAGCAGAAAGAGCTGAgaaacagAAGCAGCTGTTGAAGACACAGAGAAAATGCCAACAGAGAATCTTGGATAGAGTGAAGGAGCATCAGGAGCTAACAGAAGCTGTGGAGTTTTATGAGCGCTCTGCACAAAGAACAGTGCAGGAAAGTGAGAGGATCTTTACTGATCTGATCAAATCCATTGAGAGAAGACGCAGTGAGGTGACACGgctgatcagagctcaggagaaagCTGCAGTGGGTCGAGCTGAAGAAGTCATGAagcaactggagcaggagattgcAGAGCTGAAGAAGAGAGACGCTGAGATGGAGAGGCTTTCACACACAGATCCCATCCATTTTCTCCAGAGTTTCCCGTCTCTTGTGGACACTCCTGGATCTGCAGACTTACACTCCATCAGGCTCAgtcctttcctctctcttgaggATGTAACAGCATTTGTGTCTCAACTGAGGGACAACGTGGAAAAATTCTGCTATGAGGAGTTCAGAATGGTATCAAATGCAGTAAAAGAAATCCAGATTATTCCACTTCCTGCACCCAAAAGCAGAGAAGAGTTTCTACAGTACTCCTGTCAGTTCACACTGGATCCCaacacagtaaataaacacctctgtctgtctgagagGAACACAGTGGTGACCTGCAGTGAAACAGCTCAATCATATTCTGTTCATCCAGACAGATTTGACTATTATCTCCAAGTTTTGTGtaaagagggtgtgtgtggaCGGTGTTACTGGGAGGTCGAGTGGAGCGGACGTCATGGCGTTTCTATAGCGGTGTCATATAAAAACATCAGCCGGAAAGGAAAAGGTACTGAATGTTTGTTTGGCCGAAACGAGCAGTCCTGGAGATTGTTTTGCTATCCTTCCTGCTACGCGTTCAgacacattaaaaaagaaattaaaatccCAGTAATACTGAGCTCCTCTAGGataggagtgtatgtggatcacagggcaggaactctgtccttctacagcgtctctgacacgatgaagctcctccacagagttcacaccacattcactcagcctctTTATCCCgggtttgtggtttgttcaggaTCAACtattaaactgtaattaaactgtaattagcagatacatttatgaaataaacatgtttgaCTAGAAGGGATGAGAAATCATTAACGCTGAAGAATAATTAcgttttttcattattcttgTTACTTTTTGATATTATCCATACGGCATGGAATTTAGCTTTCAGACTTACTGGGGCCTTTTAATCATTTCTCAAGATCCATGCGTTAATGAAAATCTCCTCAGTGGACACATATCGTGTACAGGAATGTATTTGCTTTTGGTATCTGAATGTATTTGGGCTAAAGAGACAGTTTTATCTTTGCGCTGACCTTAGGTTAGAAGTCTAGGAAAGGTGAGTTGAGAAAGTTCTCCTCCGTATGTGGGCAGATGAGTGTGTATGCACATGAATGAAGCTTCAATAAAAACTATTCCTCTTTTCCAAGTTTGCAGCTGCTCACATCTTTATTAAGAAGAAATAGACGTCACAATCCAACAAGCGGTGTTGTCAGCAGGATAGGACTGAGACACAGTGAGTGTTTTTCAACCGGAAAcaataaaaagtgttcattaagAGCTTAAGATTTTTCTTACACATGCAGTATGACATGCAGCCAAACCTTCCCAAACTTGCTTCCAAACTTTACTTCACGTCCATAGCAGTAAAAAGGAGGAttcatacataaaataaatttgtcgTCATATCTTGCAAAACCATTGtccataagtattcacccccactgCTGTAAAGCTCCTAAATTCTTTACTTTGGAATAAGACAAGATTATAACTTCAGGTTTTTAGTTTGCAAAAACTAACTTTAGTTAGCAAAAGCAAACATGGAAATCACATCAGTAGACTTCTATAAAACAAGCAGGACATGCTCTTTTAATCCCAAGGGTTCTCTGAAACCTctagcagaaaataaaaaaaaattcccttgTCGATGCTGGATGTAAAAGATGCACAACAGGTTGACAAGAATTCAGGAAAAATTCTACATGTACACCGTCTTattaaatttgttaaatatgaTGTTAAATGTATACTCTATAGCCAAAAGTCCGTAAACTCCTGAACTTCAGTGGGTgtgtggtcaggtgtgcacata

Function

NR:

description
PREDICTED: tripartite motif-containing protein 16-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70504 False 224 lncRNA 0.44 3 4928360 4940658
TU70512 False 341 lncRNA 0.44 2 4940739 4942117
XM_034304066.1 True 3081 mRNA 0.42 6 4935885 4945021

Neighbor

gene id symbol gene type direction distance location
c8a c8a coding downstream 50131 4866481 ~ 4878229 (-)
trnar-ucg_1 NA coding downstream 118496 4809792 ~ 4809864 (-)
nom1 nom1 coding downstream 158489 4758649 ~ 4769871 (-)
ube3c ube3c,LOC107684811,LOC107556065,LOC107724408,LOC107653289 coding downstream 199238 4678739 ~ 4729122 (-)
LOC113547274 LOC108268240 coding downstream 256175 4663140 ~ 4672185 (-)
LOC113547302 LOC108268221 coding upstream 15970 4960991 ~ 4973092 (-)
LOC113547301 LOC108268219 coding upstream 29241 4974262 ~ 4982521 (-)
LOC113547304 LOC108268219 coding upstream 47568 4992589 ~ 5017807 (-)
LOC113547303 LOC108268222 coding upstream 68327 5013348 ~ 5017849 (-)
LOC117597187 LOC108261662 coding upstream 75086 5020107 ~ 5025400 (-)
G59559 NA non-coding downstream 13909 4870160 ~ 4914451 (-)
G59416 NA non-coding downstream 170595 4757431 ~ 4757765 (-)
G59398 NA non-coding downstream 249624 4677165 ~ 4678736 (-)
LOC117597175 LOC108268239 non-coding downstream 331829 4580941 ~ 4596531 (-)
LOC113547239 NA non-coding downstream 336592 4590344 ~ 4591768 (-)
G59598 NA non-coding upstream 12696 4957717 ~ 4957921 (-)
LOC117597191 LOC108261288,LOC108268060,LOC108268227 non-coding upstream 177115 5122136 ~ 5129619 (-)
G59777 LOC108267254,LOC108261847,LOC108262218,LOC108268247,LOC108268074,LOC108268075,LOC108268261 non-coding upstream 234724 5179745 ~ 5212658 (-)
G59788 NA non-coding upstream 247139 5192160 ~ 5220686 (-)
LOC117597176 NA non-coding upstream 317463 5262484 ~ 5265109 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 280480 4642020 ~ 4647880 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 356533 4560788 ~ 4571827 (-)
LOC113537670 LOC108261092,LOC108261462,LOC108261482,LOC108268217,LOC108268206 other downstream 672076 4198213 ~ 4256284 (-)
LOC113547240 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108261096,LOC108266115 other downstream 718254 4171199 ~ 4210106 (-)
LOC117597092 LOC108261482,LOC108261305,LOC108261462,LOC108268217 other downstream 1008229 3894592 ~ 3920131 (-)
LOC113547297 NA other upstream 137787 5082808 ~ 5086357 (-)
cldn1 LOC108268314 other upstream 533521 5478542 ~ 5494039 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other upstream 955228 5900249 ~ 5959545 (-)
LOC117597002 LOC107721237 other upstream 1936361 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 3507589 8452610 ~ 8551855 (-)

Expression


Co-expression Network