G59598


Basic Information

Item Value
gene id G59598
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 4957717 ~ 4957921 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU70520
CCACATTTAGGTATTTAGGAAAAGCCTCCGGTGACTCCTCTGCTATCTGTGATATAACCACAAATAGCTGTCCTGGATGACTGAAAACAGCCTCTCATGAAACAGAATACACAGGTGGTTGTTTTTCATCTGTAACAGGAGTCCAAGCGTCACAGTGCACATATTGTtgaggaatggtttgaggaacattaGGTATCGTTATTAC

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04724 Glutamatergic synapse
ko04720 Long-term potentiation
ko04713 Circadian entrainment
ko05014 Amyotrophic lateral sclerosis
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU70520 True 205 lncRNA 0.42 1 4957717 4957921

Neighbor

gene id symbol gene type direction distance location
c8a c8a coding downstream 79488 4866481 ~ 4878229 (-)
trnar-ucg_1 NA coding downstream 147853 4809792 ~ 4809864 (-)
nom1 nom1 coding downstream 187846 4758649 ~ 4769871 (-)
ube3c ube3c,LOC107684811,LOC107556065,LOC107724408,LOC107653289 coding downstream 228595 4678739 ~ 4729122 (-)
LOC113547274 LOC108268240 coding downstream 285532 4663140 ~ 4672185 (-)
LOC113547302 LOC108268221 coding upstream 3070 4960991 ~ 4973092 (-)
LOC113547301 LOC108268219 coding upstream 16341 4974262 ~ 4982521 (-)
LOC113547304 LOC108268219 coding upstream 34668 4992589 ~ 5017807 (-)
LOC113547303 LOC108268222 coding upstream 55427 5013348 ~ 5017849 (-)
LOC117597187 LOC108261662 coding upstream 62186 5020107 ~ 5025400 (-)
G59559 NA non-coding downstream 43266 4870160 ~ 4914451 (-)
G59416 NA non-coding downstream 199952 4757431 ~ 4757765 (-)
G59398 NA non-coding downstream 278981 4677165 ~ 4678736 (-)
LOC117597175 LOC108268239 non-coding downstream 361186 4580941 ~ 4596531 (-)
LOC113547239 NA non-coding downstream 365949 4590344 ~ 4591768 (-)
LOC117597191 LOC108261288,LOC108268060,LOC108268227 non-coding upstream 164215 5122136 ~ 5129619 (-)
G59777 LOC108267254,LOC108261847,LOC108262218,LOC108268247,LOC108268074,LOC108268075,LOC108268261 non-coding upstream 221824 5179745 ~ 5212658 (-)
G59788 NA non-coding upstream 234239 5192160 ~ 5220686 (-)
LOC117597176 NA non-coding upstream 304563 5262484 ~ 5265109 (-)
G59823 NA non-coding upstream 364580 5322501 ~ 5329901 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 12696 4928360 ~ 4945021 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 309837 4642020 ~ 4647880 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 385890 4560788 ~ 4571827 (-)
LOC113537670 LOC108261092,LOC108261462,LOC108261482,LOC108268217,LOC108268206 other downstream 701433 4198213 ~ 4256284 (-)
LOC113547240 LOC108261092,LOC108261462,LOC108261482,LOC108268206,LOC108261096,LOC108266115 other downstream 747611 4171199 ~ 4210106 (-)
LOC113547297 NA other upstream 124887 5082808 ~ 5086357 (-)
cldn1 LOC108268314 other upstream 520621 5478542 ~ 5494039 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other upstream 942328 5900249 ~ 5959545 (-)
LOC117597002 LOC107721237 other upstream 1923461 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 3494689 8452610 ~ 8551855 (-)

Expression


Co-expression Network