G59663


Basic Information

Item Value
gene id G59663
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5301882 ~ 5369456 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU70597
TGTGGTTGAATGCTTCAGGGCCACAAGGTGGAGTCTGATCACTtctgggggcagtcgtggcctaatggatagagagtcggacttgcaacccgaaggtgaacctgaaggtcatgggttcgagtctcaggtccggcagggattgtaggtggggggagtgaatgaccagcgctctcttccaccctcaataccacgactgaggtgagacccttgagcaaggcaccgaacccccaactgctccccgggcgccgcagcaaaaaaggctgcccactgctccgggtgtgtgttcacggtgtgtgtgttcactactgtgt
>TU70598
TGTGGTTGAATGCTTCAGGGCCACAAGGTGGAGTCTGATCACTtctgggggcagtcgtggcctaatggatagagagtcggacttgcaacccgaaggtgaacctgaaggtcatgggttcgagtctcaggtccagcagggattgtaggtggggggagtgaatgaccagcgctctcttccaccctcaataccacgactgaggtgagacccttgagcaaggcaccgaacccccaactgctccccgggcgccacagcaaaaaaggctgcccactgctccgggtgtgtgttcacggtgtgtgtg

Function

GO: NA

KEGG:

id description
ko04360 Axon guidance

RNA

RNA id representative length rna type GC content exon number start site end site
TU70597 True 311 lncRNA 0.58 2 5301882 5363888
TU70598 False 298 lncRNA 0.58 2 5301882 5369456

Neighbor

gene id symbol gene type direction distance location
LOC113547265 LOC108268247,LOC108268075,LOC108267254,LOC108261847 coding upstream 49033 5240683 ~ 5252849 (+)
LOC113547266 NA coding upstream 92121 5195675 ~ 5209761 (+)
LOC113547246 LOC108267254,LOC108261847,LOC108268247,LOC108262218,LOC108268074,LOC108268075,LOC108268261 coding upstream 110137 5191076 ~ 5191745 (+)
LOC113547260 LOC108261847,LOC108267254 coding upstream 123492 5152315 ~ 5178390 (+)
LOC113547286 prdx6,LOC108267850,LOC108414843 coding downstream 32828 5402284 ~ 5410215 (+)
LOC113547281 LOC108267848 coding downstream 61780 5431236 ~ 5433720 (+)
angptl1b LOC108268093,LOC108440936,LOC105891317 coding downstream 80026 5449482 ~ 5466119 (+)
LOC113547279 tns3,LOC101063620 coding downstream 137245 5506701 ~ 5554666 (+)
LOC113547280 phactr1,LOC108267725 coding downstream 414202 5783658 ~ 5824929 (+)
LOC113547270 NA non-coding upstream 35868 5264016 ~ 5266014 (+)
G59521 LOC108268222,LOC108268223 non-coding upstream 284080 5011920 ~ 5017802 (+)
G59483 NA non-coding upstream 343568 4958062 ~ 4958314 (+)
G59479 NA non-coding upstream 349284 4952371 ~ 4952598 (+)
G59478 NA non-coding upstream 351231 4950300 ~ 4950651 (+)
G59725 NA non-coding downstream 59825 5429281 ~ 5429622 (+)
G59712 NA non-coding downstream 68388 5437844 ~ 5438721 (+)
G59745 NA non-coding downstream 122745 5492201 ~ 5492461 (+)
G59707 NA non-coding downstream 185494 5554950 ~ 5555698 (+)
G59908 NA non-coding downstream 187135 5556591 ~ 5556859 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other upstream 112169 5179554 ~ 5189713 (+)
G59492 LOC108268230,LOC108268219 other upstream 287069 4974195 ~ 5014813 (+)
LOC113547245 LOC108261852,LOC108268259,LOC108261974 other upstream 345415 4947137 ~ 4956467 (+)
G59366 ube3c other upstream 593484 4707442 ~ 4708398 (+)
LOC117597167 NA other upstream 648761 4650477 ~ 4653121 (+)
LOC113547289 LOC108267851 other downstream 18912 5388368 ~ 5391829 (+)
LOC113547291 LOC108268023 other downstream 210340 5579796 ~ 5596225 (+)
trnat-ugu_2 NA other downstream 774076 6143532 ~ 6143802 (+)
LOC117597080 NA other downstream 1225670 6595126 ~ 6596601 (+)
LOC113547228 NA other downstream 1314880 6684336 ~ 6704346 (+)

Expression


Co-expression Network