LOC113547289 (LOC108267851)


Basic Information

Item Value
gene id LOC113547289
gene name LOC108267851
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5388368 ~ 5391829 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU70634
AGGAGAATCAAAACCAACATTTAAGCATGTGATGTACATGCGCACTAAGAATAATTTATGCTAattaattatgataattatgattataattatgataataatttcatttaaacgCTGATATATAGTTAATCTGTATATCAGTTATACAGTGGATTCAGCTGGGAAACATCGATAATCATCAATAAGTAAATTCACTAAAGTCACGTTAAAGTGATGCTTCAGTGAAATAATTTTGTTCCTCATGTCCTCACTTCGTTTCCCTGTGTCGGTTCTCCATGTTCTCGGATGGAGGAGCTGAGAAGGAAGGAAGCGAAGCAAAGAGGTACAGTTAAAGAAGTGAAAAGTCTTTACCTTCCTACCTTCTCCTTTAATAACCACTTATGCCTTGTGCCTTGTCTCTTAGGGAAGAAGGGGCGATCCagctgggggcggagctaatttctgggccataaaattattaatagcagcctttaaaaagaaaattgaaaaaaaaattgaaaaaaaattttgaaaaa
>XM_026947553.2
GATCTTATAAATCTCCACCTTCCACCATTTCAAAGCTTAGACAACATCCCACAAGTGAAGAAGCACAAAGTCGGATTTTAGAAGAAACACTTTGGAAAAACATACACATAGAAGTGAATAGACAGACATCCTTTATTTAAATCCTGACTCTCTGCTCCTAATTATGTGGACGAGGTTTGCTGTGTTTGTCTTCTGGTTGGTTGTGGATGTCCAGGCTCTGGACCGAGCCTCGTTCCGCAGGTCCAATGATCGCTACAGCCGCTGCCAGTACACCTTCACTGTGGACAGCCCAGTGGAATCCAGCTGTCCCAGCACCATGGAGGCAGAAAATCTGAGCGCTCGCATCACGCTCCTGGAGGCGGTGGTGAGCCGTGTGCTGGGGGCCGAGGCAGTCACGGAGGCAGTGAGGACGCCAGCAGAGACCGAGGAGATGAGGCAGCTTCTACAGGATAAAGAGCAGCTGGACGGGCAGGTGAAGGAGCTGCAGAGACGAGTGGAGGAGCTCACGATGGAGACAGAAAAGCTCAGAGAGAAACCCTGTCCACTGGTCCCTGACTCTGAGGACAGCTTCGGCGTTAACAGAGGCAGTGGTCCTGCTGTGAGTGGTGCATTTCAAGAGATGAAGGCTGAGGTTTCTGAGGTTCCAGCTCCTCCTAAAGTCAAGGAGAACGTCCGAGACAATGCAGACTGTGGGGAACTTGTTTCTGTTGGTGAGCCTGAGACCCATCAAAAGGCGACCAGCATCACAGGGAAGTACGGGATGTGGTTCCAGGACCCCGAGTCTCCGGGAGCTCCGTACGGGCCGGACACGGTGTGGCGCATTGACACTGTGAGCAGCGACGTACGAGAACTGTACGCCTACGAAAACCTGGAGCAGCTCGCTCGTGGCTATCCCATGAAGGTCCTGCTTCTACCGGAGTCCATGGAGAGTACAGGGGGCACAGTGTACCAGGGTTCACTTTACTACCAGCGAAAACAGAGCCCCATGCTGCTGCGTTATGACCTCACCGCTGAGGACATAGTGGCCCGAAGAGAGCTGCCACACCCTGGATTCCACGGCCAGTACCCTTACTCCTGGGGTGGCTACACTGACATCGACTTGGCTGTGGACGAGAAGGGACTGTGGGCCATCTACAGCACGGAAAACACTCGCGGAGCCATCATCATCTCGCAGCTGGATCCCAAGAACCTGAAAGTGACCAGGAGCTGGGAGACCAACATCCAGAAGAACAAAGTGGCGAACGCCTTCATGGTCTGTGGCAGGCTGTACACGGTGGCGAGCTACAGAGctaacaccaccaccatcaactTAAGCTTTGACACAGCTAGCGGGCAGAGCAAAATGGTGGACGTGCCCTTCCGCAACCGTTATGGCTACAACAGCATGATCGACTACAACGCGGCGAGAAGGAAGCTATACTCCTGGGACAACTTCCACATGGTCACCTATGACGTGAAACTCGCGAGGGCCAGCAGCTCACAGTGACAGAGACTGATTCTAGATACAAGAAGCAGTGATACATGTTTATAACCCCTGATCTTTAAAGTTTTAGACTTCAGCAGGGAAAATATCCAAACTTTTGTAACAGTTTGTAACTTACCGCCATCTTCTGGCTATAAGATCAACTGCAAACACAGTGATAACATGGAGTGTGTCCCAAAACTCGAATTGATGCCTCCTTGATTCCTCCATCTTAAATGTGTTTAGAAGAATCAGTGAATAAATACAGAGGTGGCTTTTGGATAAAGGACACACAGGTGCTTCCTACATGGAAGTATGCTTTGTTGTAGCATGTGACGTTAGCACACGGTGTAAATGCTGCACCTCtcccaaaaaaagaaatgacaataaatggtacaataataaaaatcacaaacacaaactgaatcataataaataaataaacattttaatttgcaTGGAAGTCAATTAACAtgtcttgctttaaaaaatggagaaatTAAATGATGAGGAGAATCAAAACCAACATTTAAGCATGTGATGTACATGCGCACTAAGAATAATTTATGCTAattaattatgataattatgattataattatgataataatttcatttaaacgCTGATATATAGTTAATCTGTATATCAGTTATACAGTGGATTCAGCTGGGAAACATCGATAATCATCAATAAGTAAATTCACTAAAGTCACGTTAAAGTGATGCTTCAGTGAAATAATTTTGTTCCTCATGTCCTCACTTCGTTTCCCTGTGTCGGTTCTCCATGTTCTCGGATGGAGGAGCTGAGAAGGAAGGAAGCGAAGCAAAGAGGTACAGTTAAAGAAGTGAAAAGTCTTTACCTTCCTACCTTCTCCTTTAATAACCACTTATGCCTTGTGCCTTGTCTCTTAGGGAAGAAGGGGCGATCCagctgggggcggagctaatttctgggccataaaattattaatagcagcctttaaaaagaaaattgaaaaaaaaattgaaaaaaaattttgaaaaacaatATTGCTATTCTATGTTTTTTGTCTAAGGTATCCTTAAAAATGATGTGATTGTTATAGGTCTAGAAATGCATTTAAGTATTAAAAGAACTGCACCTTTACAAATGTATGAGGCTGAATATTATTTCAGGACAGTGTATACCctaaagtaaattaataaattaattaaaattgctATAAAATTGCTATAAAAAATGAACTTATAAAGATCACTGGgggatgaaaaaaaattctatagtCCTTTTGTTACCAGGATATATTCTTACCCTGTATGAGTAAAAACACttgttttacagaaaattatacaTTCCACAAATATCaaactttttataaatatttgaatatataaaatgatttttctaCTTGATTACAGACTGTTTAAACGTTTAAATTTTAGAGTATA

Function

NR:

description
PREDICTED: myocilin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70634 False 515 lncRNA 0.35 1 5390911 5391425
XM_026947553.2 True 2890 mRNA 0.44 3 5388368 5391829

Neighbor

gene id symbol gene type direction distance location
LOC113547263 LOC108261082 coding upstream 81827 5286357 ~ 5306541 (+)
LOC113547265 LOC108268247,LOC108268075,LOC108267254,LOC108261847 coding upstream 135519 5240683 ~ 5252849 (+)
LOC113547266 NA coding upstream 178607 5195675 ~ 5209761 (+)
LOC113547246 LOC108267254,LOC108261847,LOC108268247,LOC108262218,LOC108268074,LOC108268075,LOC108268261 coding upstream 196623 5191076 ~ 5191745 (+)
LOC113547260 LOC108261847,LOC108267254 coding upstream 209978 5152315 ~ 5178390 (+)
LOC113547286 prdx6,LOC108267850,LOC108414843 coding downstream 10455 5402284 ~ 5410215 (+)
LOC113547281 LOC108267848 coding downstream 39407 5431236 ~ 5433720 (+)
angptl1b LOC108268093,LOC108440936,LOC105891317 coding downstream 57653 5449482 ~ 5466119 (+)
LOC113547279 tns3,LOC101063620 coding downstream 114872 5506701 ~ 5554666 (+)
LOC113547280 phactr1,LOC108267725 coding downstream 391829 5783658 ~ 5824929 (+)
G59663 NA non-coding upstream 18912 5301882 ~ 5369456 (+)
LOC113547270 NA non-coding upstream 122354 5264016 ~ 5266014 (+)
G59521 LOC108268222,LOC108268223 non-coding upstream 370566 5011920 ~ 5017802 (+)
G59483 NA non-coding upstream 430054 4958062 ~ 4958314 (+)
G59479 NA non-coding upstream 435770 4952371 ~ 4952598 (+)
G59725 NA non-coding downstream 37452 5429281 ~ 5429622 (+)
G59712 NA non-coding downstream 46015 5437844 ~ 5438721 (+)
G59745 NA non-coding downstream 100372 5492201 ~ 5492461 (+)
G59707 NA non-coding downstream 163121 5554950 ~ 5555698 (+)
G59908 NA non-coding downstream 164762 5556591 ~ 5556859 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other upstream 198655 5179554 ~ 5189713 (+)
G59492 LOC108268230,LOC108268219 other upstream 373555 4974195 ~ 5014813 (+)
LOC113547245 LOC108261852,LOC108268259,LOC108261974 other upstream 431901 4947137 ~ 4956467 (+)
G59366 ube3c other upstream 679970 4707442 ~ 4708398 (+)
LOC117597167 NA other upstream 735247 4650477 ~ 4653121 (+)
LOC113547291 LOC108268023 other downstream 187967 5579796 ~ 5596225 (+)
trnat-ugu_2 NA other downstream 751703 6143532 ~ 6143802 (+)
LOC117597080 NA other downstream 1203297 6595126 ~ 6596601 (+)
LOC113547228 NA other downstream 1292507 6684336 ~ 6704346 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other downstream 2664227 8056056 ~ 8062839 (+)

Expression


Co-expression Network