G59777 (LOC108267254,LOC108261847,LOC108262218,LOC108268247,LOC108268074,LOC108268075,LOC108268261)


Basic Information

Item Value
gene id G59777
gene name LOC108267254,LOC108261847,LOC108262218,LOC108268247,LOC108268074,LOC108268075,LOC108268261
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5179745 ~ 5212658 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU70725
CTGTTTCTCAGCTCTTCCTGCTGCAGCTGATACTGTATCATGTCTTTTATGTTCATCCATGGTACAAAGAATGCAGATACACTGCTGGTCAGTGCGACAGTAAACCTCCAGCAGTTTGTCATGCTGAGAGCAGATCTGCTCCTGGAGTCGTCTGGAGGCTTCGACCAGCTTGTGCTTCTTATAGGCAGGAGATTCATAGTGAGGCTGGAGGTGAGTTTCACAGAAAGAGGCCAGACACACCAGACAGGACTTGATGGCTTTGGATTTTCCCCGAGTGCAGGAATCACACTCCACATCATCAGGTCCAGCTGAACACTGAGCAGGACGTGTAGCTTGGAGTCCTGTCTTCTTCAGTGTCTCCACTACTTCAGCCAGCATGGTGTTTTTACTCACAACAGGTCTTGGAGTGAAGGTTTGTCTACACTGAGGACAGCTATAGACTCCCTTCTGATCCTCCTGATCCCAGCAGCCATTAATACACATCATACAGAAACTGTGTCcacacagaagagctacagGATCCTTGAGTAGATCCAGACAGATTGAACAGCTGAAACGATCCTGAAGTCCTAAAATATTCGCTTCCGCcattttactgaaaaacaaactcTCACACAGTCACTTACAGCAAACTCGTGTGTCTGAAAGTCACCTGATTTTTactgacaagaaaaaaataaaacacagttgtttagaaaaataaaaactcctgAACAGAGATCTGTATAGCGTCAGCAGATCTGTAAGCACACAGGCGGAAATAAAGCTGCACTCAGACAGAACAGCAGCGGATCAGTTTCACTTTCGTTTCTGTTGAAGCAGCATGCAGGATGAATGCAGGATGAGAGTAAG
>TU70733
TCTCAGCTCTTCCTGCTGCAGCTGATACTGTATCATGTCTTTTATGTTCATCCATGGTACAAAGAATGCAGATACACTGCTGGTCAGTGCGACAGTAAACCTCCAGCAGTTTGTCATGCTGAGAGCAGATCTGCTCCTGGAGTCGTCTGGAGGCTTCGACCAGCTTGTGCTTCTTATAGGCAGGAGATTCATAGTGAGGCTGGAGGTGAGTTTCACAGAAAGAGGCCAGACACACCAGACAGGACTTGATGGCTTTGGATTTTCTCCCAGTGCAgaaatcacactccacatctTCAGGTCCAGCTGAACACTGAGCAGGACGTGTAGCTTGGAGTCCTGTCTTCTTCAGCATCTCCACTACTTCAGCCAGCATGGTGTTTTTACTCACAACAGGTCTTGGAGTGAAGGTTTGTCTACACTGAGGACAGCTATAGACTCCCTTCTGATCCTCCTGATCCCAGCAGCCATTAATACACACCATACAGAAACTGTGTCCACATGAAAGAGCTACTGGATCCTTGAGTAGATCCAGACAGATTGGACAACTGAACTGATCCTGAGCAACAGAAATATTCACCTCTGCcattttactgaaaaacaaactcatACACAGTCACTAACAGCACCTCACACTTCCTGGTTGAGGTTGTAAAAGCCGTGTGTAAAACAGATGTGTCTGAAAGAATGGCTCACCTGTTTTAAATTgcacaaaataacaacaacgaTAATTGTTTTTGTAAATACTTCTGCACACGAAAGCCTGTATTACCAACAAAACCTCGAAGACAGAGATGAAACAGATGCGCACTCGGCACACGCTCAGAACAAAC

Function

NR:

description
PREDICTED: E3 ubiquitin/ISG15 ligase TRIM25-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70725 True 852 lncRNA 0.46 2 5195606 5212658
TU70733 False 830 lncRNA 0.45 3 5179745 5196452

Neighbor

gene id symbol gene type direction distance location
LOC113547258 LOC108268208,LOC108261287,LOC108268263 coding downstream 29523 5129697 ~ 5150222 (-)
LOC113547224 NA coding downstream 75619 5100415 ~ 5104126 (-)
LOC117597187 LOC108261662 coding downstream 154345 5020107 ~ 5025400 (-)
LOC113547303 LOC108268222 coding downstream 161896 5013348 ~ 5017849 (-)
LOC113547304 LOC108268219 coding downstream 161938 4992589 ~ 5017807 (-)
dnm3b LOC108268313,LOC108413145 coding upstream 96203 5308861 ~ 5357290 (-)
LOC113547296 NA coding upstream 181219 5393877 ~ 5399388 (-)
fggy fggy coding upstream 198164 5410822 ~ 5426769 (-)
tada1 tada1,LOC106569412 coding upstream 222565 5435223 ~ 5442703 (-)
igfbp1b LOC108268024 coding upstream 383632 5596290 ~ 5602267 (-)
LOC117597191 LOC108261288,LOC108268060,LOC108268227 non-coding downstream 50126 5122136 ~ 5129619 (-)
G59598 NA non-coding downstream 221824 4957717 ~ 4957921 (-)
G59559 NA non-coding downstream 265294 4870160 ~ 4914451 (-)
G59416 NA non-coding downstream 421980 4757431 ~ 4757765 (-)
G59398 NA non-coding downstream 501009 4677165 ~ 4678736 (-)
LOC117597176 NA non-coding upstream 49826 5262484 ~ 5265109 (-)
G59823 NA non-coding upstream 109843 5322501 ~ 5329901 (-)
G59833 NA non-coding upstream 165395 5378053 ~ 5378280 (-)
G59838 LOC108267851 non-coding upstream 175772 5388430 ~ 5389298 (-)
G59839 LOC108267851 non-coding upstream 176982 5389640 ~ 5391068 (-)
LOC113547297 NA other downstream 93388 5082808 ~ 5086357 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 234724 4928360 ~ 4945021 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 531865 4642020 ~ 4647880 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 607918 4560788 ~ 4571827 (-)
LOC113537670 LOC108261092,LOC108261462,LOC108261482,LOC108268217,LOC108268206 other downstream 923461 4198213 ~ 4256284 (-)
cldn1 LOC108268314 other upstream 265884 5478542 ~ 5494039 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other upstream 687591 5900249 ~ 5959545 (-)
LOC117597002 LOC107721237 other upstream 1668724 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 3239952 8452610 ~ 8551855 (-)
LOC113526753 LOC108267287,LOC108261139 other upstream 3358838 8571496 ~ 8595625 (-)

Expression


Co-expression Network