G59838 (LOC108267851)


Basic Information

Item Value
gene id G59838
gene name LOC108267851
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5388430 ~ 5389298 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU70811
CAGGAAATGAATACCAAAATTCTTACTTAATTACAGTctcagagAGTCAGGGACCAGTGGACAGGGTTTCTCTCTGAGCTTTTCTGTCTCCATCGTGAGCTCCTCCACTCGTCTCTGCAGCTCCTTCACCTGCCCGTCCAGCTGCTCTTTATCCTGTAGAAGCTGCCTCATCTCCTCGGTCTCTGCTGGCGTCCTCACTGCCTCCGTGACTGCCTCGGCCCCCAGCACACGGCTCACCACCGCCTCCAGGAGCGTGATGCGAGCGCTCAGATTTTCTGCCTCCATGGTGCTGGGACAGCTGGATTCCACTGGGCTGTCCACAGTGAAGGTGTACTGGCAGCGGCTGTAGCGATCATTGGACCTGCGGAACGAGGCTCGGTCCAGAGCCTGGACATCCACAACCAACCAGAAGACAAACACAGCAAACCTCGTCCACATAATTAGGAGCAGAGAGTCAGGATTTAAATAAAGGATGTCTGTCTATTCACTTCTATGTGTATGTTTTTCCAAAGTGTTTCTTCTAAAATCCGACTTTGTGC

Function

NR:

description
PREDICTED: myocilin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70811 True 539 lncRNA 0.52 2 5388430 5389298

Neighbor

gene id symbol gene type direction distance location
dnm3b LOC108268313,LOC108413145 coding downstream 31140 5308861 ~ 5357290 (-)
LOC113547258 LOC108268208,LOC108261287,LOC108268263 coding downstream 238208 5129697 ~ 5150222 (-)
LOC113547224 NA coding downstream 284304 5100415 ~ 5104126 (-)
LOC117597187 LOC108261662 coding downstream 363030 5020107 ~ 5025400 (-)
LOC113547303 LOC108268222 coding downstream 370581 5013348 ~ 5017849 (-)
LOC113547296 NA coding upstream 4579 5393877 ~ 5399388 (-)
fggy fggy coding upstream 21524 5410822 ~ 5426769 (-)
tada1 tada1,LOC106569412 coding upstream 45925 5435223 ~ 5442703 (-)
igfbp1b LOC108268024 coding upstream 206992 5596290 ~ 5602267 (-)
adcy1b adcy1,LOC103368946,LOC103142996,LOC102227141,LOC104929332 coding upstream 228565 5617863 ~ 5694235 (-)
G59833 NA non-coding downstream 10150 5378053 ~ 5378280 (-)
G59823 NA non-coding downstream 58529 5322501 ~ 5329901 (-)
LOC117597176 NA non-coding downstream 123321 5262484 ~ 5265109 (-)
G59788 NA non-coding downstream 167744 5192160 ~ 5220686 (-)
G59777 LOC108267254,LOC108261847,LOC108262218,LOC108268247,LOC108268074,LOC108268075,LOC108268261 non-coding downstream 175772 5179745 ~ 5212658 (-)
G59839 LOC108267851 non-coding upstream 342 5389640 ~ 5391068 (-)
G59843 NA non-coding upstream 18183 5407481 ~ 5412825 (-)
G59869 NA non-coding upstream 102728 5492026 ~ 5492374 (-)
G59865 NA non-coding upstream 165653 5554951 ~ 5555776 (-)
G59987 NA non-coding upstream 335227 5724525 ~ 5724761 (-)
LOC113547297 NA other downstream 302073 5082808 ~ 5086357 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 443409 4928360 ~ 4945021 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 740550 4642020 ~ 4647880 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 816603 4560788 ~ 4571827 (-)
LOC113537670 LOC108261092,LOC108261462,LOC108261482,LOC108268217,LOC108268206 other downstream 1132146 4198213 ~ 4256284 (-)
cldn1 LOC108268314 other upstream 89244 5478542 ~ 5494039 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other upstream 510951 5900249 ~ 5959545 (-)
LOC117597002 LOC107721237 other upstream 1492084 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 3063312 8452610 ~ 8551855 (-)
LOC113526753 LOC108267287,LOC108261139 other upstream 3182198 8571496 ~ 8595625 (-)

Expression


Co-expression Network