G59839 (LOC108267851)


Basic Information

Item Value
gene id G59839
gene name LOC108267851
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5389640 ~ 5391068 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU70812
CTGAATCCACTGTATAACTGATATACAGATTAACTATATATCAGcgtttaaatgaaattattatcataattataatcataattatcataattaatTAGCATAAATTATTCTTAGTGCGCATGTACATCACATGCTTAAATGTTGGTTTTGATTCTCCTCATCATTTAatttctccattttttaaagcaagacaTGTTAATTGACTTCCAtgcaaattaaaatgtttatttatttattatgattcagtttgtgtttgtgatttttattattgtaccatttattgtcatttctttttttgggaGAGGTGCAGCATTTACACCGTGTGCTAACGTCACATGCTACAACAAAGCATACTTCCATGTAGGAAGCACCTGTGTGTCCTTTATCCAAAAGCCACCTCTGTATTTATTCACTGATTCTTCTAAACACATTTAAGATGGAGGAATCAAGGAGGCATCAATTCGAGTTTTGGGACACACTCCATGTTATCACTGTGTTTGCAGTTGATCTTATAGCCAGAAGATGGCGGTAAGTTACAAACTGTTACAAAAGTTTGGATATTTTCCCTGCTGAAGTCTAAAACTTTAAAGATCAGGGGTTATAAACATGTATCACTGCTTCTTGTATCTAGAATCAGTCTCTGTCACTGTGAGCTGCTGGCCCTCGCGAGTTTCACGTCATAGGTGACCATGTGGAAGTTGTCCCAGGAGTATAGCTTCCTTCTCGCCGCGTTGTAGTCGATCATGCTGTTGTAGCCATAACGGTTGCGGAAGGGCACGTCCACCATTTTGCTCTGCCCGCTAGCTGTGTCAAAGCTTAagttgatggtggtggtgttagCTCTGTAGCTCGCCACCGTGTACAGCCTGCCACAGACCATGAAGGCGTTCGCCACTTTGTTCTTCTGGATGTTGGTCTCCCAGCTCCTGGTCACTTTCAGGTTCTTGGGATCCAGCTGCGAGATGATGATGGCTCCGCGAGTGTTTTCCGTGCTGTAGATGGCCCACAGTCCCTTCTCGTCCACAGCCAAGTCGATGTCAGTGTAGCCACCCCAGGAGTAAGGGTACTGGCCGTGGAATCCAGGGTGTGGCAGCTCTCTTCGGGCCACTATGTCCTCAGCGGTGAGGTCATAACGCAGCAGCATGGGGCTCTGTTTTCGCTGGTAGTAAAGTGAACCCTGGTACACTGTGCCCCCTGTACTCTCCATGGACTCCGGTAGAAGCAGGACCTTCATGGGATAGCCACGAGCGAGCTGCTCCAGGTTTTCGTAGGCGTACAGTTCTCGTACGTCGCTGCTCACAGTGTCAATGCGCCACACCGTGTCCGGCCCGTACGGAGCTCCCGGAGACTCGGGGTCCTGGAACCACATCCCGTACTTCCCTGTGATGCTGGTCGCCTTTTGATGGGTCTCAGGCTCACCAACAGAAAC

Function

NR:

description
PREDICTED: myocilin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70812 True 1429 lncRNA 0.46 1 5389640 5391068

Neighbor

gene id symbol gene type direction distance location
dnm3b LOC108268313,LOC108413145 coding downstream 32350 5308861 ~ 5357290 (-)
LOC113547258 LOC108268208,LOC108261287,LOC108268263 coding downstream 239418 5129697 ~ 5150222 (-)
LOC113547224 NA coding downstream 285514 5100415 ~ 5104126 (-)
LOC117597187 LOC108261662 coding downstream 364240 5020107 ~ 5025400 (-)
LOC113547303 LOC108268222 coding downstream 371791 5013348 ~ 5017849 (-)
LOC113547296 NA coding upstream 2809 5393877 ~ 5399388 (-)
fggy fggy coding upstream 19754 5410822 ~ 5426769 (-)
tada1 tada1,LOC106569412 coding upstream 44155 5435223 ~ 5442703 (-)
igfbp1b LOC108268024 coding upstream 205222 5596290 ~ 5602267 (-)
adcy1b adcy1,LOC103368946,LOC103142996,LOC102227141,LOC104929332 coding upstream 226795 5617863 ~ 5694235 (-)
G59838 LOC108267851 non-coding downstream 342 5388430 ~ 5389298 (-)
G59833 NA non-coding downstream 11360 5378053 ~ 5378280 (-)
G59823 NA non-coding downstream 59739 5322501 ~ 5329901 (-)
LOC117597176 NA non-coding downstream 124531 5262484 ~ 5265109 (-)
G59788 NA non-coding downstream 168954 5192160 ~ 5220686 (-)
G59843 NA non-coding upstream 16413 5407481 ~ 5412825 (-)
G59869 NA non-coding upstream 100958 5492026 ~ 5492374 (-)
G59865 NA non-coding upstream 163883 5554951 ~ 5555776 (-)
G59987 NA non-coding upstream 333457 5724525 ~ 5724761 (-)
G59992 NA non-coding upstream 334910 5725978 ~ 5726434 (-)
LOC113547297 NA other downstream 303283 5082808 ~ 5086357 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 444619 4928360 ~ 4945021 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 741760 4642020 ~ 4647880 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 817813 4560788 ~ 4571827 (-)
LOC113537670 LOC108261092,LOC108261462,LOC108261482,LOC108268217,LOC108268206 other downstream 1133356 4198213 ~ 4256284 (-)
cldn1 LOC108268314 other upstream 87474 5478542 ~ 5494039 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other upstream 509181 5900249 ~ 5959545 (-)
LOC117597002 LOC107721237 other upstream 1490314 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 3061542 8452610 ~ 8551855 (-)
LOC113526753 LOC108267287,LOC108261139 other upstream 3180428 8571496 ~ 8595625 (-)

Expression


Co-expression Network