G59843


Basic Information

Item Value
gene id G59843
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5407481 ~ 5412825 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU70816
GCTGTGGTTTTAGGACACTCGGCCTTCATTCAGAAAACACTTTGATTCACTGTGAGCTGATAAAACACACCGGTGGTTTTCACACCTCTCAGTAAAACTCTCCGATCACCTGTGGCAGGATCTACCTGAGACAACCGTTCACACGTTCACGAAACCGACTTACGCCTTACATCCTCTGAGAGTAGCGCAGGTTTGTGTTAATGtggtatcgtttctatagtaacagctcgcaCATGGACTTCTGTTGTGGACAATGTACACACTCTAAGGGTgatattaaacagattttataaCGAAAAACATGGACTcgtcgatatggtgaagtttcctgtagGTAGATGTTTATtgaacgtttatggaaggagtctccagtgtcagcgctgtgtaacagtctgaggtaaagctcTAACTCACAGAAatgtttctcggtaacatgacaagctgtgttttgggtttttttttttt

Function

GO: NA

KEGG:

id description
ko01040 Biosynthesis of unsaturated fatty acids

RNA

RNA id representative length rna type GC content exon number start site end site
TU70816 True 465 lncRNA 0.43 2 5407481 5412825

Neighbor

gene id symbol gene type direction distance location
LOC113547296 NA coding downstream 8093 5393877 ~ 5399388 (-)
dnm3b LOC108268313,LOC108413145 coding downstream 50191 5308861 ~ 5357290 (-)
LOC113547258 LOC108268208,LOC108261287,LOC108268263 coding downstream 257259 5129697 ~ 5150222 (-)
LOC113547224 NA coding downstream 303355 5100415 ~ 5104126 (-)
LOC117597187 LOC108261662 coding downstream 382081 5020107 ~ 5025400 (-)
tada1 tada1,LOC106569412 coding upstream 22398 5435223 ~ 5442703 (-)
igfbp1b LOC108268024 coding upstream 183465 5596290 ~ 5602267 (-)
adcy1b adcy1,LOC103368946,LOC103142996,LOC102227141,LOC104929332 coding upstream 205038 5617863 ~ 5694235 (-)
LOC113547299 LOC108268057,LOC108440942 coding upstream 313765 5726590 ~ 5738222 (-)
LOC113547287 LOC108267871,LOC108267869 coding upstream 491371 5904196 ~ 5917960 (-)
G59839 LOC108267851 non-coding downstream 16413 5389640 ~ 5391068 (-)
G59838 LOC108267851 non-coding downstream 18183 5388430 ~ 5389298 (-)
G59833 NA non-coding downstream 29201 5378053 ~ 5378280 (-)
G59823 NA non-coding downstream 77580 5322501 ~ 5329901 (-)
LOC117597176 NA non-coding downstream 142372 5262484 ~ 5265109 (-)
G59869 NA non-coding upstream 79201 5492026 ~ 5492374 (-)
G59865 NA non-coding upstream 142126 5554951 ~ 5555776 (-)
G59987 NA non-coding upstream 311700 5724525 ~ 5724761 (-)
G59992 NA non-coding upstream 313153 5725978 ~ 5726434 (-)
G60092 NA non-coding upstream 372470 5785295 ~ 5851346 (-)
LOC113547297 NA other downstream 321124 5082808 ~ 5086357 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 462460 4928360 ~ 4945021 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 759601 4642020 ~ 4647880 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 835654 4560788 ~ 4571827 (-)
LOC113537670 LOC108261092,LOC108261462,LOC108261482,LOC108268217,LOC108268206 other downstream 1151197 4198213 ~ 4256284 (-)
cldn1 LOC108268314 other upstream 65717 5478542 ~ 5494039 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other upstream 487424 5900249 ~ 5959545 (-)
LOC117597002 LOC107721237 other upstream 1468557 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 3039785 8452610 ~ 8551855 (-)
LOC113526753 LOC108267287,LOC108261139 other upstream 3158671 8571496 ~ 8595625 (-)

Expression


Co-expression Network