cldn1 (LOC108268314)


Basic Information

Item Value
gene id cldn1
gene name LOC108268314
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5478542 ~ 5494039 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU70820
TGATATGGATGTGTTCGTGTCTCTCCCGCTGCAGTGGAGGTCCAGGCGGCTCGGGGGTTCATGCTGTCGGGGATCCTGCTGTGTGGCATCGCCGTCCTGGTGGCCTCGGTGGGCATGCAGTGCACTAAGTGCCTGGAGGATGACGTGGAGCTCAAAAACAAAGTGGCTATGGCTGGAGGAGCGGTGTTCGTCGTCGCAGGTGTCTGTGCTTTCGTTGCTACTATCTGGTACGGAGATAACATCAGACGGCAGTTCTTCAACCCCTTCACCCCGACTAATGGAAGGTACGAGTTTGGTAAAGCTCTGTATATCGGATGGGGAGCGTGTGCTCTCACTGTGATTGGCGGCAGCTTGCTGTGCTGTACCTGTGGCAATAAGAGTTCAGGAGGCACAGCAGCCCGTTACCCAGCGTCCCGCCCGAACCAGCCCTCACAGCCCGGCTACGTCTAACACTCAGCCACACCTCCACTGCAGAACAGTGGGTACTCTCAGGATAATCCAGATACataacaaaacatcaaacctctCAGATTCCCTTTTCTCTAATGTACtgcaaaatatataatatttctcaCTCACTTCATCTTTTCTTCCTGATTTAATAATGCACTCTCAAGCTGTATGATTTGAGATGAATGTTTTGTCAGAAATCCATGTTATAACTGATTGTTTGttcaaaatgatattttctgtaCAATCAACTTTTCTTTGCAGATACTTAATGGAAAGGAATAGGTTGCGTTAGTTTTACCAACCTGGCAACCTTTAGCCACGAAATCCCTGATTCTGATTCAAAGAAACCAGACCAGTGAACTTTGACTcacttttcacatgaatttgAACTCTTCCTAACTTTTCCAAAAAGGTGATTTGTAAGAAtgtctgtagattttttttaaataatgaaattgtgCTAAAATACCAaggaacttgtttttttgtttttttgttt
>XM_034303602.1
ATGACGCTCAGGGCCGCGTTGAACCCCAGGCGACAGCAGGAACACCGTAAAATGCAGCAGGAAGTCGGGTTCGGTGAGGGGAGAGAGGAGGCCATTAGTCTGGAATGTGACCTGGCTCAGAGAGTGGAGGTCCAGGCGGCTCGGGGGTTCATGCTGTCGGGGATCCTGCTGTGTGGCATCGCCGTCCTGGTGGCCTCGGTGGGCATGCAGTGCACTAAGTGCCTGGAGGATGACGTGGAGCTCAAAAACAAAGTGGCTATGGCTGGAGGAGCGGTGTTCGTCGTCGCAGGTGTCTGTGCTTTCGTTGCTACTATCTGGTACGGAGATAACATCAGACGGCAGTTCTTCAACCCCTTCACCCCGACTAATGGAAGGTACGAGTTTGGTAAAGCTCTGTATATCGGATGGGGAGCGTGTGCTCTCACTGTGATTGGCGGCAGCTTGCTGTGCTGTACCTGTGGCAATAAGAGTTCAGGAGGCACAGCAGCCCGTTACCCAGCGTCCCGCCCGAACCAGCCCTCACAGCCCGGCTACGTCTAACACTCAGCCACACCTCCACTGCAGAACAGTGGGTACTCTCAGGATAATCCAGATACataacaaaacatcaaacctctCAGATTCCCTTTTCTCTAATGTACtgcaaaatatataatatttctcaCTCACTTCATCTTTTCTTCCTGATTTAATAATGCACTCTCAAGCTGTATGATTTGAGATGAATGTTTTGTCAGAAATCCATGTTATAACTGATTGTTTGttcaaaatgatattttctgtaCAATCAACTTTTCTTTGCAGATACTTAATGGAAAGGAATAGGTTGCGTTAGTTTTACCAACCTGGCAACCTTTAGCCACGAAATCCCTGATTCTGATTCAAAGAAACCAGACCAGTGAACTTTGACTcacttttcacatgaatttgAACTCTTCCTAACTTTTCCAAAAAGGTGATTTGTAAGAAtgtctgtagattttttttaaataatgaaattgtgCTAAAATACCAaggaacttgtttt

Function

NR:

description
claudin-1-like

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70820 False 952 TUCP 0.45 4 5478542 5485797
XM_034303602.1 True 1027 mRNA 0.47 4 5482363 5494039

Neighbor

gene id symbol gene type direction distance location
tada1 tada1,LOC106569412 coding downstream 35839 5435223 ~ 5442703 (-)
fggy fggy coding downstream 51773 5410822 ~ 5426769 (-)
LOC113547296 NA coding downstream 79154 5393877 ~ 5399388 (-)
dnm3b LOC108268313,LOC108413145 coding downstream 121252 5308861 ~ 5357290 (-)
LOC113547258 LOC108268208,LOC108261287,LOC108268263 coding downstream 328320 5129697 ~ 5150222 (-)
igfbp1b LOC108268024 coding upstream 102251 5596290 ~ 5602267 (-)
adcy1b adcy1,LOC103368946,LOC103142996,LOC102227141,LOC104929332 coding upstream 123824 5617863 ~ 5694235 (-)
LOC113547299 LOC108268057,LOC108440942 coding upstream 232551 5726590 ~ 5738222 (-)
LOC113547287 LOC108267871,LOC108267869 coding upstream 410157 5904196 ~ 5917960 (-)
LOC113547251 LOC108267869,LOC108267871 coding upstream 437291 5931330 ~ 5949680 (-)
G59843 NA non-coding downstream 65717 5407481 ~ 5412825 (-)
G59839 LOC108267851 non-coding downstream 87474 5389640 ~ 5391068 (-)
G59838 LOC108267851 non-coding downstream 89244 5388430 ~ 5389298 (-)
G59833 NA non-coding downstream 100262 5378053 ~ 5378280 (-)
G59823 NA non-coding downstream 148641 5322501 ~ 5329901 (-)
G59865 NA non-coding upstream 60912 5554951 ~ 5555776 (-)
G59987 NA non-coding upstream 230486 5724525 ~ 5724761 (-)
G59992 NA non-coding upstream 231939 5725978 ~ 5726434 (-)
G60092 NA non-coding upstream 291256 5785295 ~ 5851346 (-)
G60136 NA non-coding upstream 344095 5838134 ~ 5840474 (-)
LOC113547297 NA other downstream 392185 5082808 ~ 5086357 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 533521 4928360 ~ 4945021 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 830662 4642020 ~ 4647880 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 906715 4560788 ~ 4571827 (-)
LOC113537670 LOC108261092,LOC108261462,LOC108261482,LOC108268217,LOC108268206 other downstream 1222258 4198213 ~ 4256284 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other upstream 406210 5900249 ~ 5959545 (-)
LOC117597002 LOC107721237 other upstream 1387343 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 2958571 8452610 ~ 8551855 (-)
LOC113526753 LOC108267287,LOC108261139 other upstream 3077457 8571496 ~ 8595625 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other upstream 3145429 8639468 ~ 9528825 (-)

Expression


Co-expression Network