LOC113547291 (LOC108268023)


Basic Information

Item Value
gene id LOC113547291
gene name LOC108268023
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5579796 ~ 5596225 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU70896
GCGCTGCGGTGCGGGGCTGGTCTGCCGACACCGGCCGGGCGAGCCGAGGCCGCTGCACGCGCTGCTGGAGGGCCGTGGGGTGTGCGTGAATCAGACCGCACCTCCTCCGGTCAGCGCGCGAGAAGTCGAGAGTGCCAGGATGCCTGAGGAAGATTCCAGCAGCAACACAACGAGTCCGTCAGTGCCAGCTGGACATGAGCAGTCAACGGATGTCTTTCCCTCCCACGGTCGGCGTCCCCCGCCCTACCGGCTTCACCCCAAAGCTGAGGACATCCGACGCGAGCAACTCCGGAAGAGCCAGAGCTTCAAAATAGAGGAACCTCTGGCAGCTGCCCCTTCCAACCATGAGAACATCGCCTTCGATTCCAAGCAGGAGCGAGAGTATTGCTGGCCGTCTAAAGGCCGAAAACGCGGCATATGCTGGTGCGTGGACAAGTACGGCCAGCCCCTGCCAGGCTTCGATGGAAAGGacagaggaaatgtgcagtgcTACGCCATGGAGAGCCAATAGAAAATACCAGACAggtgaaggaaagagaaagagagatcgAGGGAGTGTGTGTACACTGAAGAATCTCCACGCTCAGACCCTCCATCTCGGACTCGTGTCTCGGTCCTCCAGGAAAAAAATATCGAGGGGGCATAAAATTCTGGGCTTTCCTGAGCTTCGACGAGCTCTAATTTATTTCTGTGCTCCACGCTTTAGCAGCAGTGGAACCCTAGATGCTTGCAGGAGAGAAAGAGGTTGATGGATGAAGGGATGTGGGTATGTCCCAAGAGGCAGTAGAGCTGTAGTGTGTGGACGCAATTGAGACAGGACTGAccccaaaatatatataaaaaaataaataaataaaaaaaaggacacgGAAGAAGGCACTAACGCTATAGAGCACTTCCtataagtttgtgtgtgtgtgtggctattGTAATAATTTAACCATGTGCCTCTGTATCGTCATACCATATCAGTGGCTTCAAAGCTTAGTTTCACCTTTAATACACATTCCTGTTGCGTAAAATTGGGAATTAGAATTAAACGAGACTTTATTGATCAGATTCAGTATCAAGAGCATGTGCATGATGCATGAGTACAACCGTATAAACTGACTATATTAGGACTGATCAACCTTCATGACTTCCATATCTGCTTTATTTCCTCTGCATATACAATACTTCTTAACTATCAATCTCAAAATGTTCTATAAACACGTCTGCGATTGCTTTAAAAGACATTCTAAACATAGCAACACTTTTTTTGCTTGAGTGACAGACGGCCATTTTTCTGGCTTTTAAACAAGTGTGTGAAGCTGAAATCTTTCCAGGAGACGTCCTTGTTCCACGCACCCTAACATGAGCcaaaataggatttttttttttttttggactgtgtATACAAAGATTGTCTTCATGTCACTAGATTTTGGTTCACTGCTTTATATTTTCAGGAAGTAATGTTTGCTATGAAATTTCTGACTGGCTTTAAATGTATGCTGGATTTTTGGATAACTTACTGAAACGTTTCCTTTCAACTTTCTCACAACAACCAACTGGTATAAAGGTGTAAAATTTCCAAATAGAGTAGAATTCTATAACCTCTATCTGCTTACAAATTCCCAACTTGGGTATAATTGTAAAATTCCTAACTGGTATAAAAGTCTAAAACTTACAAATTGCAAATTAATTGAAACTGTAAAACTTCCAAATGGTGTAAAAATTGTGAAATCTCCAACTGGAGTAAAATTGGAAAGACTCCAACTAGTGAAAATTTATAACCTTCACAACTGGtgtaaaatactaaaaatcTTACTAGCATGAAATTATCAAATCCTCAACTGGATTTAAAAACTCCAACAGGAATGAAAACTCTAAGACTAGCATAAAATTCCCAAACTagagtaaatttaaaaaatattcaatatagTGTAGaattatggggaaaaaaggccCAACTGGAGTTAAAATGCAAAATCTCCAAATGGAGTAAACTCTAAAACTAgtgtaaaaatttaaaatcctTAACAACAGTAAAATTCAAAAACATTCAATTAGcgtaaaactgtaaaattccCAACTGTAGTGAAAAATTCAAAAACCTCTTGTtgtttcggctgctcccattagggggcgccacagtggatcattggtccacatatttgatttggcacagtttttacgccggatgccaaAACCTCTAACTGATGTGAAACTATAAAATATCCAGTTGAAGTAAAATTCATAAACATTAGCTAgcataaaattgtaaaattccCAACTGGAGAAAATTTCTAAAACCTCCGACTTgtgaaaaattgtaaaataccAAACTGGCTTAAAATTTTGCACCATCCACCTGgtgcaaatttgtaaaaatcCTCAACTGGTATGAACATCAAATGCTAACATAGCTAATAAGGAGGTGAAACACATTTTAGCTTGTACATGTTCACACCTTTTGGTCCAGTTAGGAGCTGATATCTGTATGGTTTGCAGGTACTTTATCCATTATTTCTAGTTCTAGTAACGCTTTTAACCAGCCCTTATTGACCTTCCTCTCGCTAATGGGAATTCCCATTAACATCTTGAAACTGTTCCATTACTTCATCATCTAGCGTCAAGTTTGGTAGATGAACCCTTGAAATGATTCAACCTCCATGAAGACGTCAGGAGCACAACTTAAGCCGAAAGGCATTCTAGTTagatgcttttttcccccccaaatcTGTAAAAGTCAGATAAAGCTGTTTCTCAGGGTTATCTGGAGTCAAAGTATAATCAGGaattattacttaaaaaatatttgatttgcTACATTAAAATCGTGTTTTAAGTCCAAACCCTACTGCATTTATACATAATAGCTGATGATGCTTGATAAATCCATTATGCAAGCTAGGTCACAGATCAGCTACATATAATGCTAGTTACTTAGCTAGCTTATTTTCAAGCCAGTATGAAACTGTAAATAGTTCCAAGGAAATACACCAGACAACTTGGCAAGACAGTTGTTTCAACAGCATGACGAGAGTCTGATAAAATTAGCATCGAATAACGGGGGGGAAAAGACTTTTATCACTGCACACTCTTCACTTTCTTTTGTTAAGGTTTTttggtatattttttttttcttagttctTTTGTGACCAAAAGCAAACTTTGCTGTGAACAGGGAAACTTAGTACACATTAAACACATACTCAGGCTTCTAGTGATATTCAAATGCTtctagtacagtacagtgtagcTAAGAGTAtggcttttttttcattatactGGCTTCTTTTGGACTAAATCTCCATTGTGATAAGCTATTAGcaagaaaataaacaagaaacCAAAACCTCTACCTGGGGACATTACAGCACACCATGTGTAAACAGTATTTTGACATTATTAACTTGTGTGGCT
>XM_026947556.2
TGGCGACACCCGGGACGCTAAGCTTTCACATCTCtgggcattattattattattaatattaatattattagtattattattagaataattattattatttgattttttttcctccgtGAGCATGGTGGTCGCGCTCCGCTCCCTGCTCGTGTCCGTGAGTCTGGCCGCGGTGGCGCGCCTGTCCTCCGCCGTGGGCGCGGTGATCCGCTGCGAGCCGTGCGACGCCGGAGCGCGGACGCTGTGCGACCCCGTGCCCGAGGACTGCGTGGAGCGGGTGCGCGAGCCGGGCTGCGGCTGCTGCGTGACGTGCGCGCTGGCCGAGGGTCGAGCGTGCGGGGTTTACACGGGGCGCTGCGGTGCGGGGCTGGTCTGCCGACACCGGCCGGGCGAGCCGAGGCCGCTGCACGCGCTGCTGGAGGGCCGTGGGGTGTGCGTGAATCAGACCGCACCTCCTCCGGTCAGCGCGCGAGAAGTCGAGAGTGCCAGGATGCCTGAGGAAGATTCCAGCAGCAACACAACGAGTCCGTCAGTGCCAGCTGGACATGAGCAGTCAACGGATGTCTTTCCCTCCCACGGTCGGCGTCCCCCGCCCTACCGGCTTCACCCCAAAGCTGAGGACATCCGACGCGAGCAACTCCGGAAGAGCCAGAGCTTCAAAATAGAGGAACCTCTGGCAGCTGCCCCTTCCAACCATGAGAACATCGCCTTCGATTCCAAGCAGGAGCGAGAGTATGGTCCATGTCGAAGGGAAATGGATGGCATACTTAATATGCTGAAGATCACAGACATGGTGAACCCCCGCGGCTTCCGCATCCCAAACTGTGACAGGAAAGGCTTCTACAGGAAAAAACAGTGCTGGCCGTCTAAAGGCCGAAAACGCGGCATATGCTGGTGCGTGGACAAGTACGGCCAGCCCCTGCCAGGCTTCGATGGAAAGGacagaggaaatgtgcagtgcTACGCCATGGAGAGCCAATAGAAAATACCAGACAggtgaaggaaagagaaagagagatcgAGGGAGTGTGTGTACACTGAAGAATCTCCACGCTCAGACCCTCCATCTCGGACTCGTGTCTCGGTCCTCCAGGAAAAAAATATCGAGGGGGCATAAAATTCTGGGCTTTCCTGAGCTTCGACGAGCTCTAATTTATTTCTGTGCTCCACGCTTTAGCAGCAGTGGAACCCTAGATGCTTGCAGGAGAGAAAGAGGTTGATGGATGAAGGGATGTGGGTATGTCCCAAGAGGCAGTAGAGCTGTAGTGTGTGGACGCAATTGAGACAGGACTGAccccaaaatatatataaaaaaataaataaataaaaaaaaggacacgGAAGAAGGCACTAACGCTATAGAGCACTTCCtataagtttgtgtgtgtatatgtgtgtgtgcgtgtgtgtgtgtgtgtgtggctattGTAATAATTTAACCATGTGCCTCTGTATCGTCATACCATATCAGTGGCTTCAAAGCTTAGTTTCACCTTTAATACACATTCCTGTTGCGTAAAATTGGGAATTAGAATTAAACGAGACTTTATTGATCAGATTCAGTATCAAGAGCATGTGCATGATGCATGAGTACAACCGTATAAACTGACTATATTAGGACTGATCAACCTTCATGACTTCCATATCTGCTTTATTTCCTCTGCATATACAATACTTCTTAACTATCAATCTCAAAATGTTCTATAAACACGTCTGCGATTGCTTTAAAAGACATTCTAAACATAGCAACACTTTTTTTGCTTGAGTGACAGACGGCCATTTTTCTGGCTTTTAAACAAGTGTGTGAAGCTGAAATCTTTCCAGGAGACGTCCTTGTTCCACGCACCCTAACATGAGCcaaaataggatttttttttttttttggactgtgtATACAAAGATTGTCTTCATGTCACTAGATTTTGGTTCACTGCTTTATATTTTCAGGAAGTAATGTTTGCTATGAAATTTCTGACTGGCTTTAAATGTATGCTGGATTTTTGGATAACTTACTGAAACGTTTCCTTTCAACTTTCTCACAACAACCAACTGGTATAAAGGTGTAAAATTTCCAAATAGAGTAGAATTCTATAACCTCTATCTGCTTACAAATTCCCAACTTGGGTATAATTGTAAAATTCCTAACTGGTATAAAAGTCTAAAACTTACAAATTGCAAATTAATTGAAACTGTAAAACTTCCAAATGGTGTAAAAATTGTGAAATCTCCAACTGGAGTAAAATTGGAAAGACTCCAACTAGTGAAAATTTATAACCTTCACAACTGGtgtaaaatactaaaaatcTTACTAGCATGAAATTATCAAATCCTCAACTGGATTTAAAAACTCCAACAGGAATGAAAACTCTAAGACTAGCATAAAATTCCCAAACTagagtaaatttaaaaaatattcaatatagTGTAGaattatggggaaaaaaggccCAACTGGAGTTAAAATGCAAAATCTCCAAATGGAGTAAACTCTAAAACTAgtgtaaaaatttaaaatcctTAACAACAGTAAAATTCAAAAACATTCAATTAGcgtaaaactgtaaaattccCAACTGTAGTGAAAAATTCAAAAACCTCTTGTtgtttcggctgctcccattagggggcgccacagtggatcattggtccacatatttgatttggcacagtttttacgccggatgccaaAACCTCTAACTGATGTGAAACTATAAAATATCCAGTTGAAGTAAAATTCATAAACATTAGCTAgcataaaattgtaaaattccCAACTGGAGAAAATTTCTAAAACCTCCGACTTgtgaaaaattgtaaaataccAAACTGGCTTAAAATTTTGCACCATCCACCTGgtgcaaatttgtaaaaatcCTCAACTGGTATGAACATCAAATGCTAACATAGCTAATAAGGAGGTGAAACACATTTTAGCTTGTACATGTTCACACCTTTTGGTCCAGTTAGGAGCTGATATCTGTATGGTTTGCAGGTACTTTATCCATTATTTCTAGTTCTAGTAACGCTTTTAACCAGCCCTTATTGACCTTCCTCTCGCTAATGGGAATTCCCATTAACATCTTGAAACTGTTCCATTACTTCATCATCTAGCGTCAAGTTTGGTAGATGAACCCTTGAAATGATTCAACCTCCATGAAGACGTCAGGAGCACAACTTAAGCCGAAAGGCATTCTAGTTagatgcttttttcccccccaaatcTGTAAAAGTCAGATAAAGCTGTTTCTCAGGGTTATCTGGAGTCAAAGTATAATCAGGaattattacttaaaaaatatttgatttgcTACATTAAAATCGTGTTTTAAGTCCAAACCCTACTGCATTTATACATAATAGCTGATGATGCTTGATAAATCCATTATGCAAGCTAGGTCACAGATCAGCTACATATAATGCTAGTTACTTAGCTAGCTTATTTTCAAGCCAGTATGAAACTGTAAATAGTTCCAAGGAAATACACCAGACAACTTGGCAAGACAGTTGTTTCAACAGCATGACGAGAGTCTGATAAAATTAGCATCGAATAACGGGGGGGAAAAGACTTTTATCACTGCACACTCTTCACTTTCTTTTGTTAAGGTTTTttggtatattttttttttcttagttctTTTGTGACCAAAAGCAAACTTTGCTGTGAACAGGGAAACTTAGTACACATTAAACACATACTCAGGCTTCTAGTGATATTCAAATGCTtctagtacagtacagtgtagcTAAGAGTAtggcttttttttcattatactGGCTTCTTTTGGACTAAATCTCCATTGTGATAAGCTATTAGcaagaaaataaacaagaaacCAAAACCTCTACCTGGGGACATTACAGCACACCATGTGTAAACAGTATTTTGACATTATTAACTTGTGTGGCTAGATTTTTATAAGTGTCAGGTTATTCCCAGTGCCTTAAAACAGGGAGATATAtctgtgtatatttttactttcaGTAATTAAAGATCTAATTTAAGGAA

Function

NR:

description
PREDICTED: insulin-like growth factor-binding protein 3

GO: NA

KEGG:

id description
K10138 IGFBP3; insulin-like growth factor-binding protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
TU70896 False 3408 TUCP 0.40 4 5580144 5596126
XM_026947556.2 True 4003 mRNA 0.42 4 5579796 5596225

Neighbor

gene id symbol gene type direction distance location
LOC113547279 tns3,LOC101063620 coding upstream 25130 5506701 ~ 5554666 (+)
angptl1b LOC108268093,LOC108440936,LOC105891317 coding upstream 113677 5449482 ~ 5466119 (+)
LOC113547281 LOC108267848 coding upstream 146076 5431236 ~ 5433720 (+)
LOC113547286 prdx6,LOC108267850,LOC108414843 coding upstream 169581 5402284 ~ 5410215 (+)
LOC113547263 LOC108261082 coding upstream 273255 5286357 ~ 5306541 (+)
LOC113547280 phactr1,LOC108267725 coding downstream 187433 5783658 ~ 5824929 (+)
phlpp1 phlpp1,LOC105899321,LOC107563109,LOC101073770,LOC104947935 coding downstream 233581 5829806 ~ 5901415 (+)
LOC117597064 phlpp1,LOC105899321,LOC106925929,LOC101166990,LOC103479552,LOC102225687,LOC108239649 coding downstream 323418 5919643 ~ 5928583 (+)
dusp22b dusp22,LOC103368952,LOC100701332 coding downstream 395703 5991928 ~ 6009784 (+)
irf4a irf4a,LOC108267998,LOC107565529 coding downstream 418695 6014920 ~ 6037232 (+)
G59908 NA non-coding upstream 22937 5556591 ~ 5556859 (+)
G59707 NA non-coding upstream 24098 5554950 ~ 5555698 (+)
G59745 NA non-coding upstream 87335 5492201 ~ 5492461 (+)
G59712 NA non-coding upstream 141075 5437844 ~ 5438721 (+)
G59725 NA non-coding upstream 150174 5429281 ~ 5429622 (+)
G59990 NA non-coding downstream 129221 5725446 ~ 5725668 (+)
G59993 NA non-coding downstream 130377 5726602 ~ 5727441 (+)
G60029 NA non-coding downstream 246550 5842775 ~ 5843074 (+)
G60033 NA non-coding downstream 257444 5853669 ~ 5853888 (+)
G60036 NA non-coding downstream 301674 5897899 ~ 5898990 (+)
LOC113547289 LOC108267851 other upstream 187967 5388368 ~ 5391829 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other upstream 390083 5179554 ~ 5189713 (+)
G59492 LOC108268230,LOC108268219 other upstream 564983 4974195 ~ 5014813 (+)
LOC113547245 LOC108261852,LOC108268259,LOC108261974 other upstream 623329 4947137 ~ 4956467 (+)
G59366 ube3c other upstream 871398 4707442 ~ 4708398 (+)
trnat-ugu_2 NA other downstream 547307 6143532 ~ 6143802 (+)
LOC117597080 NA other downstream 998901 6595126 ~ 6596601 (+)
LOC113547228 NA other downstream 1088111 6684336 ~ 6704346 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other downstream 2459831 8056056 ~ 8062839 (+)
LOC117597156 NA other downstream 3099127 8695352 ~ 8724440 (+)

Expression


Co-expression Network