G59987


Basic Information

Item Value
gene id G59987
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5724525 ~ 5724761 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU70973
ggtctgaccctcttagttccagtgaagggaaattgtcatgctacatcatacaaagacattcaatacaattgtgtgctttaaactttatgggaacagtttggagaagaaccacataaaggatgtgatgatcaggggtgcacatacttttggctatattaTGTACAATACATGACTCActatcttattttatcttacTGATCAGCTGCACAAAGGGAAGATGGCTCCACAAAGTCTGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70973 True 237 lncRNA 0.39 1 5724525 5724761

Neighbor

gene id symbol gene type direction distance location
adcy1b adcy1,LOC103368946,LOC103142996,LOC102227141,LOC104929332 coding downstream 30290 5617863 ~ 5694235 (-)
igfbp1b LOC108268024 coding downstream 122258 5596290 ~ 5602267 (-)
tada1 tada1,LOC106569412 coding downstream 281822 5435223 ~ 5442703 (-)
fggy fggy coding downstream 297756 5410822 ~ 5426769 (-)
LOC113547296 NA coding downstream 325137 5393877 ~ 5399388 (-)
LOC113547299 LOC108268057,LOC108440942 coding upstream 1829 5726590 ~ 5738222 (-)
LOC113547287 LOC108267871,LOC108267869 coding upstream 179435 5904196 ~ 5917960 (-)
LOC113547251 LOC108267869,LOC108267871 coding upstream 206569 5931330 ~ 5949680 (-)
LOC113547282 LOC108267872 coding upstream 231366 5956127 ~ 5967304 (-)
ripk1l ripk1 coding upstream 247863 5972624 ~ 5986215 (-)
G59865 NA non-coding downstream 168749 5554951 ~ 5555776 (-)
G59869 NA non-coding downstream 232151 5492026 ~ 5492374 (-)
G59843 NA non-coding downstream 311700 5407481 ~ 5412825 (-)
G59839 LOC108267851 non-coding downstream 333457 5389640 ~ 5391068 (-)
G59838 LOC108267851 non-coding downstream 335227 5388430 ~ 5389298 (-)
G59992 NA non-coding upstream 1217 5725978 ~ 5726434 (-)
G60092 NA non-coding upstream 60534 5785295 ~ 5851346 (-)
G60136 NA non-coding upstream 113373 5838134 ~ 5840474 (-)
G60151 phlpp1,LOC101073770,LOC106599727,LOC106569160,LOC107698933 non-coding upstream 172618 5897379 ~ 5899015 (-)
G60173 NA non-coding upstream 189582 5914343 ~ 5938132 (-)
cldn1 LOC108268314 other downstream 230486 5478542 ~ 5494039 (-)
LOC113547297 NA other downstream 638168 5082808 ~ 5086357 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 779504 4928360 ~ 4945021 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 1076645 4642020 ~ 4647880 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 1152698 4560788 ~ 4571827 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other upstream 175488 5900249 ~ 5959545 (-)
LOC117597002 LOC107721237 other upstream 1156621 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 2727849 8452610 ~ 8551855 (-)
LOC113526753 LOC108267287,LOC108261139 other upstream 2846735 8571496 ~ 8595625 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other upstream 2914707 8639468 ~ 9528825 (-)

Expression


Co-expression Network