G60033


Basic Information

Item Value
gene id G60033
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5853669 ~ 5853888 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU71021
tgtctgtctgtctctctgtctgtctctcttcctcccttcctctctctctctcaccctccctctctctctgttgctctctgtctgtttctctgtctctccctccctatctctctgtctctctctctgtctgtctgtttgtctctctggtgctctctccatctgtctctgtctctctgtctctccctctttctctccctccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71021 True 200 lncRNA 0.53 2 5853669 5853888

Neighbor

gene id symbol gene type direction distance location
LOC113547280 phactr1,LOC108267725 coding upstream 28740 5783658 ~ 5824929 (+)
LOC113547279 tns3,LOC101063620 coding upstream 299003 5506701 ~ 5554666 (+)
angptl1b LOC108268093,LOC108440936,LOC105891317 coding upstream 387550 5449482 ~ 5466119 (+)
LOC113547281 LOC108267848 coding upstream 419949 5431236 ~ 5433720 (+)
LOC113547286 prdx6,LOC108267850,LOC108414843 coding upstream 443454 5402284 ~ 5410215 (+)
LOC117597064 phlpp1,LOC105899321,LOC106925929,LOC101166990,LOC103479552,LOC102225687,LOC108239649 coding downstream 65755 5919643 ~ 5928583 (+)
dusp22b dusp22,LOC103368952,LOC100701332 coding downstream 138040 5991928 ~ 6009784 (+)
irf4a irf4a,LOC108267998,LOC107565529 coding downstream 161032 6014920 ~ 6037232 (+)
trnat-ugu_1 NA coding downstream 285412 6139300 ~ 6139372 (+)
foxq1a LOC108268192 coding downstream 308265 6162153 ~ 6163840 (+)
G60029 NA non-coding upstream 10595 5842775 ~ 5843074 (+)
G59993 NA non-coding upstream 126228 5726602 ~ 5727441 (+)
G59990 NA non-coding upstream 128001 5725446 ~ 5725668 (+)
G59908 NA non-coding upstream 296810 5556591 ~ 5556859 (+)
G59707 NA non-coding upstream 297971 5554950 ~ 5555698 (+)
G60036 NA non-coding downstream 44011 5897899 ~ 5898990 (+)
G60232 NA non-coding downstream 354214 6208102 ~ 6208314 (+)
LOC117596998 NA non-coding downstream 423717 6277605 ~ 6295446 (+)
G60267 NA non-coding downstream 442103 6295991 ~ 6296234 (+)
LOC117596997 NA non-coding downstream 447437 6301325 ~ 6305562 (+)
LOC113547291 LOC108268023 other upstream 257444 5579796 ~ 5596225 (+)
LOC113547289 LOC108267851 other upstream 461840 5388368 ~ 5391829 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other upstream 663956 5179554 ~ 5189713 (+)
G59492 LOC108268230,LOC108268219 other upstream 838856 4974195 ~ 5014813 (+)
LOC113547245 LOC108261852,LOC108268259,LOC108261974 other upstream 897202 4947137 ~ 4956467 (+)
trnat-ugu_2 NA other downstream 289644 6143532 ~ 6143802 (+)
LOC117597080 NA other downstream 741238 6595126 ~ 6596601 (+)
LOC113547228 NA other downstream 830448 6684336 ~ 6704346 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other downstream 2202168 8056056 ~ 8062839 (+)
LOC117597156 NA other downstream 2841464 8695352 ~ 8724440 (+)

Expression


Co-expression Network