G60092


Basic Information

Item Value
gene id G60092
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 5785295 ~ 5851346 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU71093
CCGAAACAAAAcccagagaaataaaaatgtttataaaagtGTGCAGACGTGGGACGCAGAAGCAGAGCTAACAACGCTAAAACCAGAACAGGAATACAGACTGCGGCTTTATCCGGTATCCTGTGATGCTTCTTTCTCCGTATATAAGCAAAAGATCCCTGACACGAGAACTATTAATAGACTGCAAATTCCTGCGTTCAACAGCTGCAGACTGACATCTCATTTGCTCCGTCTGTGCTCAATGGCTCATTAGCATGAGCTTAGCTTTGTGCTTCCCTCCAGCACGCGTCTGTCTTCAGGAGGAACGAGACGCTCCGTTTCAGAGCGTTCGAGGTTTTGGCCGGGTTCTGCACTGTCACTGAGATGAGAAGGAGATTAGCGTTTCGCCTGAGGATGATTGAGGCTTCCTCGTGACTCTGTTCCAGAGGTCTTCGCTGCCTGTCTGGAGGACGCACGTCAGCCGTCTCGTTTGAAGTTTATCCGTCACAGAAGCTCGGATATTAATGTGAAACGCCGCTTTTCACAGAAATCTCTCTCAGAAGTGTGATTAGCAGCACTTTAGACTACGCCTGTCATTTATAAAGCCATTATTTAAAAGGATGCAGTGGGATAATAGGGTAATATGGCTGAAACTAATTACATGCCAACAAGGAcgtccatgttttttttttttttttttttaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71093 True 684 lncRNA 0.45 2 5785295 5851346

Neighbor

gene id symbol gene type direction distance location
LOC113547299 LOC108268057,LOC108440942 coding downstream 47073 5726590 ~ 5738222 (-)
adcy1b adcy1,LOC103368946,LOC103142996,LOC102227141,LOC104929332 coding downstream 91060 5617863 ~ 5694235 (-)
igfbp1b LOC108268024 coding downstream 183028 5596290 ~ 5602267 (-)
tada1 tada1,LOC106569412 coding downstream 342592 5435223 ~ 5442703 (-)
fggy fggy coding downstream 358526 5410822 ~ 5426769 (-)
LOC113547287 LOC108267871,LOC108267869 coding upstream 52850 5904196 ~ 5917960 (-)
LOC113547251 LOC108267869,LOC108267871 coding upstream 79984 5931330 ~ 5949680 (-)
LOC113547282 LOC108267872 coding upstream 104781 5956127 ~ 5967304 (-)
ripk1l ripk1 coding upstream 121278 5972624 ~ 5986215 (-)
trnak-cuu_3 NA coding upstream 329541 6180887 ~ 6180959 (-)
G59992 NA non-coding downstream 58861 5725978 ~ 5726434 (-)
G59987 NA non-coding downstream 60534 5724525 ~ 5724761 (-)
G59865 NA non-coding downstream 229519 5554951 ~ 5555776 (-)
G59869 NA non-coding downstream 292921 5492026 ~ 5492374 (-)
G59843 NA non-coding downstream 372470 5407481 ~ 5412825 (-)
G60151 phlpp1,LOC101073770,LOC106599727,LOC106569160,LOC107698933 non-coding upstream 46033 5897379 ~ 5899015 (-)
G60173 NA non-coding upstream 62997 5914343 ~ 5938132 (-)
G60181 NA non-coding upstream 118549 5969895 ~ 5972613 (-)
G60311 NA non-coding upstream 528352 6379698 ~ 6379897 (-)
G60328 NA non-coding upstream 538357 6389703 ~ 6390077 (-)
cldn1 LOC108268314 other downstream 291256 5478542 ~ 5494039 (-)
LOC113547297 NA other downstream 698938 5082808 ~ 5086357 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 840274 4928360 ~ 4945021 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 1137415 4642020 ~ 4647880 (-)
LOC117597059 LOC108268206,LOC108268239 other downstream 1213468 4560788 ~ 4571827 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other upstream 48903 5900249 ~ 5959545 (-)
LOC117597002 LOC107721237 other upstream 1030036 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 2601264 8452610 ~ 8551855 (-)
LOC113526753 LOC108267287,LOC108261139 other upstream 2720150 8571496 ~ 8595625 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other upstream 2788122 8639468 ~ 9528825 (-)

Expression


Co-expression Network