trnat-ugu_2


Basic Information

Item Value
gene id trnat-ugu_2
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6143532 ~ 6143802 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU71239
aaaagaTGTTACAGTTATATCATAAGCACATAAGGCCCCATAGCTCAGTGGTTAGAGCACTGGTCTTGTAAACCAGGGGTCGTGAGTTCAATCCTCACTGGGGCCTTAATGTAAAGCTTTAGGGAAGTgctggctcagtggttaaggctctggacACAGATACAAGCCGAGAAAAGCCCTTAACCCTATATGCTACATAATATGGGTGACCCTGAcatgggatatgtgaagaaaccAAAATttgctgtactgtatatatatatatgataag
>trnat-ugu_2
GGCCCCATAGCTCAGTGGTTAGAGCACTGGTCTTGTAAACCAGGGGTCGTGAGTTCAATCCTCACTGGGGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71239 True 271 lncRNA 0.42 1 6143532 6143802
trnat-ugu_2 False 73 tRNA 0.56 1 6143565 6143637

Neighbor

gene id symbol gene type direction distance location
trnat-ugu_1 NA coding upstream 4160 6139300 ~ 6139372 (+)
irf4a irf4a,LOC108267998,LOC107565529 coding upstream 106300 6014920 ~ 6037232 (+)
dusp22b dusp22,LOC103368952,LOC100701332 coding upstream 133748 5991928 ~ 6009784 (+)
LOC117597064 phlpp1,LOC105899321,LOC106925929,LOC101166990,LOC103479552,LOC102225687,LOC108239649 coding upstream 214949 5919643 ~ 5928583 (+)
phlpp1 phlpp1,LOC105899321,LOC107563109,LOC101073770,LOC104947935 coding upstream 242117 5829806 ~ 5901415 (+)
foxq1a LOC108268192 coding downstream 18351 6162153 ~ 6163840 (+)
foxf2a LOC108267118 coding downstream 27227 6171029 ~ 6177159 (+)
foxc1a foxc1,foxc1a,LOC107726170,LOC106532673,LOC101078665 coding downstream 58720 6202522 ~ 6204890 (+)
wrnip1 wrnip1 coding downstream 407183 6550985 ~ 6572077 (+)
LOC113547283 NA coding downstream 428266 6572068 ~ 6576902 (+)
G60036 NA non-coding upstream 244542 5897899 ~ 5898990 (+)
G60033 NA non-coding upstream 289644 5853669 ~ 5853888 (+)
G60029 NA non-coding upstream 300458 5842775 ~ 5843074 (+)
G59993 NA non-coding upstream 416091 5726602 ~ 5727441 (+)
G59990 NA non-coding upstream 417864 5725446 ~ 5725668 (+)
G60232 NA non-coding downstream 64300 6208102 ~ 6208314 (+)
LOC117596998 NA non-coding downstream 133803 6277605 ~ 6295446 (+)
G60267 NA non-coding downstream 152189 6295991 ~ 6296234 (+)
LOC117596997 NA non-coding downstream 157523 6301325 ~ 6305562 (+)
G60312 NA non-coding downstream 236443 6380245 ~ 6380462 (+)
LOC113547291 LOC108268023 other upstream 547307 5579796 ~ 5596225 (+)
LOC113547289 LOC108267851 other upstream 751703 5388368 ~ 5391829 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other upstream 953819 5179554 ~ 5189713 (+)
G59492 LOC108268230,LOC108268219 other upstream 1128719 4974195 ~ 5014813 (+)
LOC113547245 LOC108261852,LOC108268259,LOC108261974 other upstream 1187065 4947137 ~ 4956467 (+)
LOC117597080 NA other downstream 451324 6595126 ~ 6596601 (+)
LOC113547228 NA other downstream 540534 6684336 ~ 6704346 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other downstream 1912254 8056056 ~ 8062839 (+)
LOC117597156 NA other downstream 2551550 8695352 ~ 8724440 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other downstream 2580743 8724545 ~ 9370485 (+)

Expression


Co-expression Network