G60267


Basic Information

Item Value
gene id G60267
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6295991 ~ 6296234 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU71302
TGAGACAGCTAaacactgagagtgagacagctaaacactgagagtgagagagctaATACTGGAGTGAGACAGCAAatactgagagtgagacagctaatactgagagtgagacagctaACACTGAGAGCAAGACAGGTAatactgagagtgagacagctaatactgagagtgagacagctaaacactgagagtgagacagctaATACTGGAGTGAGACAGCTaacactgagagtgagacagctaa

Function

GO:

id name namespace
GO:0001944 vasculature development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71302 True 244 lncRNA 0.45 1 6295991 6296234

Neighbor

gene id symbol gene type direction distance location
foxc1a foxc1,foxc1a,LOC107726170,LOC106532673,LOC101078665 coding upstream 91101 6202522 ~ 6204890 (+)
foxf2a LOC108267118 coding upstream 118832 6171029 ~ 6177159 (+)
foxq1a LOC108268192 coding upstream 132151 6162153 ~ 6163840 (+)
trnat-ugu_1 NA coding upstream 156619 6139300 ~ 6139372 (+)
irf4a irf4a,LOC108267998,LOC107565529 coding upstream 258759 6014920 ~ 6037232 (+)
wrnip1 wrnip1 coding downstream 254751 6550985 ~ 6572077 (+)
LOC113547283 NA coding downstream 275834 6572068 ~ 6576902 (+)
dhx30 dhx30 coding downstream 284121 6580355 ~ 6602411 (+)
LOC113547232 LOC108262378 coding downstream 348294 6644528 ~ 6683316 (+)
LOC113547277 NA coding downstream 412147 6708381 ~ 6713301 (+)
LOC117596998 NA non-coding upstream 545 6277605 ~ 6295446 (+)
G60232 NA non-coding upstream 87677 6208102 ~ 6208314 (+)
G60036 NA non-coding upstream 397001 5897899 ~ 5898990 (+)
G60033 NA non-coding upstream 442103 5853669 ~ 5853888 (+)
G60029 NA non-coding upstream 452917 5842775 ~ 5843074 (+)
LOC117596997 NA non-coding downstream 5091 6301325 ~ 6305562 (+)
G60312 NA non-coding downstream 84011 6380245 ~ 6380462 (+)
G60362 NA non-coding downstream 117566 6413800 ~ 6414013 (+)
G60384 NA non-coding downstream 129885 6426119 ~ 6426344 (+)
trnar-ucu_1 NA non-coding downstream 134252 6430486 ~ 6430577 (+)
trnat-ugu_2 NA other upstream 152189 6143532 ~ 6143802 (+)
LOC113547291 LOC108268023 other upstream 699766 5579796 ~ 5596225 (+)
LOC113547289 LOC108267851 other upstream 904162 5388368 ~ 5391829 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other upstream 1106278 5179554 ~ 5189713 (+)
G59492 LOC108268230,LOC108268219 other upstream 1281178 4974195 ~ 5014813 (+)
LOC117597080 NA other downstream 298892 6595126 ~ 6596601 (+)
LOC113547228 NA other downstream 388102 6684336 ~ 6704346 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other downstream 1759822 8056056 ~ 8062839 (+)
LOC117597156 NA other downstream 2399118 8695352 ~ 8724440 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other downstream 2428311 8724545 ~ 9370485 (+)

Expression


Co-expression Network