LOC117597080


Basic Information

Item Value
gene id LOC117597080
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6595126 ~ 6596601 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU71549
CTGTGATGGACAAGTTGGAGACTGATGTtccaggaggagagacagaaaagaatacAGCTGGAACCATTACTGAGGTTACAACAGTGCTGACGACTATAAAGGACAAGATGGAGCCTGAGGTTCCAagaaaggagacagaaaagATTACCATTGTGAAGGAGCAATCTGGGCCTGAGGAAAAAGATACAATAGCACcaagtgagaaaacag
>XR_004578001.1
CTGTGATGGACAAGTTGGAGACTGATGTtccaggaggagagacagaaaagaatacAGCTGGAACCATTACTGAGGTTACAACAGTGCTGACGACTATAAAGGACAAGATGGAGCCTGAGGTTCCAagaaaggagacagaaaagATTACCATTGTGAAGGAGCAATCTGGG

Function

GO:

id name namespace
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0042254 ribosome biogenesis biological_process

KEGG:

id description
ko03020 RNA polymerase

RNA

RNA id representative length rna type GC content exon number start site end site
TU71549 True 210 lncRNA 0.44 3 6595126 6596601
XR_004578001.1 False 170 ncRNA 0.45 3 6595126 6596561

Neighbor

gene id symbol gene type direction distance location
LOC113547283 NA coding upstream 18224 6572068 ~ 6576902 (+)
wrnip1 wrnip1 coding upstream 23049 6550985 ~ 6572077 (+)
foxc1a foxc1,foxc1a,LOC107726170,LOC106532673,LOC101078665 coding upstream 390236 6202522 ~ 6204890 (+)
foxf2a LOC108267118 coding upstream 417967 6171029 ~ 6177159 (+)
foxq1a LOC108268192 coding upstream 431286 6162153 ~ 6163840 (+)
LOC113547232 LOC108262378 coding downstream 47927 6644528 ~ 6683316 (+)
LOC113547277 NA coding downstream 111780 6708381 ~ 6713301 (+)
LOC113547278 NA coding downstream 117206 6713807 ~ 6719716 (+)
LOC113547276 NA coding downstream 136983 6733584 ~ 6737199 (+)
gpaa1 gpaa1,LOC107671733 coding downstream 143972 6740573 ~ 6755800 (+)
trnar-ucu_1 NA non-coding upstream 164549 6430486 ~ 6430577 (+)
G60384 NA non-coding upstream 168782 6426119 ~ 6426344 (+)
G60362 NA non-coding upstream 181113 6413800 ~ 6414013 (+)
G60312 NA non-coding upstream 214664 6380245 ~ 6380462 (+)
LOC117596997 NA non-coding upstream 289564 6301325 ~ 6305562 (+)
LOC113547253 NA non-coding downstream 26235 6622836 ~ 6623651 (+)
LOC113547233 NA non-coding downstream 52181 6648782 ~ 6651846 (+)
G60529 NA non-coding downstream 192619 6789220 ~ 6797109 (+)
LOC113527002 NA non-coding downstream 205855 6802456 ~ 6805176 (+)
G60536 NA non-coding downstream 213565 6810166 ~ 6812401 (+)
trnat-ugu_2 NA other upstream 451324 6143532 ~ 6143802 (+)
LOC113547291 LOC108268023 other upstream 998901 5579796 ~ 5596225 (+)
LOC113547289 LOC108267851 other upstream 1203297 5388368 ~ 5391829 (+)
LOC113547261 LOC108262218,LOC108267254,LOC108261847,LOC108268075 other upstream 1405413 5179554 ~ 5189713 (+)
G59492 LOC108268230,LOC108268219 other upstream 1580313 4974195 ~ 5014813 (+)
LOC113547228 NA other downstream 87735 6684336 ~ 6704346 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other downstream 1459455 8056056 ~ 8062839 (+)
LOC117597156 NA other downstream 2098751 8695352 ~ 8724440 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other downstream 2127944 8724545 ~ 9370485 (+)
G61359 LOC108267272,LOC108267273 other downstream 2297869 8894470 ~ 8896729 (+)

Expression


Co-expression Network