G60669


Basic Information

Item Value
gene id G60669
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6878644 ~ 6881335 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU71790
gtattgttagtGGGGAAGCACACAGTTTTTGACCGTTTTAGGTCGTGCTTCATTATGTTAAACAGGCTTTTTGGACTATGTGTTGGACCGTGTTGAACAGTATGCTGTATCTACAAGGTATGGAgttttgtgtggactttttgtgaacaaaacaaaatgacaccACAGGAAGCTAATTGAAGCAATGTTTATTCATTGAAGCACAATAAAGAAAGACTATTTGCATCTTACATGTGTTTGCATAGACTCTAATTTTTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71790 True 259 lncRNA 0.36 2 6878644 6881335

Neighbor

gene id symbol gene type direction distance location
LOC117597000 NA coding downstream 10579 6837479 ~ 6868065 (-)
LOC117597001 NA coding downstream 24430 6849774 ~ 6854214 (-)
LOC117597003 NA coding downstream 66212 6810129 ~ 6812432 (-)
LOC117597067 NA coding downstream 80158 6795085 ~ 6798486 (-)
LOC117597066 NA coding downstream 88829 6779995 ~ 6789815 (-)
LOC113526837 NA coding upstream 75437 6956772 ~ 6959079 (-)
LOC113526956 NA coding upstream 107945 6989280 ~ 6995460 (-)
exosc4 exosc4 coding upstream 133693 7015028 ~ 7018277 (-)
prkacbb LOC108411205,LOC108267323,LOC103034112,LOC103396312,LOC102779523,LOC105935432 coding upstream 140398 7021733 ~ 7042789 (-)
LOC113526634 NA coding upstream 167789 7049124 ~ 7082000 (-)
G60672 NA non-coding downstream 85692 6785327 ~ 6792952 (-)
G60503 NA non-coding downstream 236459 6641971 ~ 6642185 (-)
LOC113547257 NA non-coding downstream 276418 6587543 ~ 6602226 (-)
trnae-cuc_12 NA non-coding downstream 434829 6443744 ~ 6443815 (-)
G60333 NA non-coding downstream 483573 6394865 ~ 6395071 (-)
G60727 NA non-coding upstream 349319 7230654 ~ 7230904 (-)
G60726 NA non-coding upstream 360790 7242125 ~ 7246436 (-)
G60846 NA non-coding upstream 559927 7441262 ~ 7538818 (-)
G60852 NA non-coding upstream 601786 7483121 ~ 7483703 (-)
G60830 NA non-coding upstream 614067 7495402 ~ 7500703 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other downstream 919099 5900249 ~ 5959545 (-)
cldn1 LOC108268314 other downstream 1384605 5478542 ~ 5494039 (-)
LOC113547297 NA other downstream 1792287 5082808 ~ 5086357 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 1933623 4928360 ~ 4945021 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 2230764 4642020 ~ 4647880 (-)
LOC117597002 LOC107721237 other upstream 47 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 1571275 8452610 ~ 8551855 (-)
LOC113526753 LOC108267287,LOC108261139 other upstream 1690161 8571496 ~ 8595625 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other upstream 1758133 8639468 ~ 9528825 (-)
G61478 NA other upstream 2101899 8983234 ~ 8984453 (-)

Expression


Co-expression Network