G60672


Basic Information

Item Value
gene id G60672
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 6785327 ~ 6792952 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU71799
CCCCCCTAGAACTGCTTTTACACAACATTCTTGTTAAACCCTTCTTGGTtaagtgtgaaaatcccaggaaatcggcagtttctgaaatactcaaaccaaccttGTACCAACAACcttgccacggttaaagtcacagagattacaCGTTTCCCccattatgatgtttgatgtgaacattacctgaagttcttgacctgtatctgcattaatGAACAGgggtacagatgttcctattaaagtggctggtgagtgaatATTAGCCGTACATCAGGGACTAACGCCAATCTTCattgttctatttttttctcttctgtcattgggctgtgtattttttgtgttttttggttgtATAGCGACCTTGGGTATgacaaatataaattaatatgtacactcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71799 True 395 lncRNA 0.39 2 6785327 6792952

Neighbor

gene id symbol gene type direction distance location
LOC117597065 NA coding downstream 5339 6778356 ~ 6779988 (-)
LOC117597185 NA coding downstream 7287 6775979 ~ 6778040 (-)
LOC113547256 LOC108267788 coding downstream 172485 6602800 ~ 6612842 (-)
mylk4a LOC108268043 coding downstream 225001 6518463 ~ 6560326 (-)
trnak-cuu_3 NA coding downstream 604368 6180887 ~ 6180959 (-)
LOC117597067 NA coding upstream 2133 6795085 ~ 6798486 (-)
LOC117597003 NA coding upstream 17177 6810129 ~ 6812432 (-)
LOC117597000 NA coding upstream 44527 6837479 ~ 6868065 (-)
LOC117597001 NA coding upstream 56822 6849774 ~ 6854214 (-)
LOC117597068 NA coding upstream 76418 6869370 ~ 6912573 (-)
G60503 NA non-coding downstream 143142 6641971 ~ 6642185 (-)
LOC113547257 NA non-coding downstream 183101 6587543 ~ 6602226 (-)
trnae-cuc_12 NA non-coding downstream 341512 6443744 ~ 6443815 (-)
G60333 NA non-coding downstream 390256 6394865 ~ 6395071 (-)
G60328 NA non-coding downstream 395250 6389703 ~ 6390077 (-)
G60669 NA non-coding upstream 85692 6878644 ~ 6881335 (-)
G60727 NA non-coding upstream 437702 7230654 ~ 7230904 (-)
G60726 NA non-coding upstream 449173 7242125 ~ 7246436 (-)
G60846 NA non-coding upstream 648310 7441262 ~ 7538818 (-)
G60852 NA non-coding upstream 690169 7483121 ~ 7483703 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other downstream 825782 5900249 ~ 5959545 (-)
cldn1 LOC108268314 other downstream 1291288 5478542 ~ 5494039 (-)
LOC113547297 NA other downstream 1698970 5082808 ~ 5086357 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 1840306 4928360 ~ 4945021 (-)
LOC113547272 LOC108268233,LOC108269831,LOC108268231,LOC108261094,LOC108268232 other downstream 2137447 4642020 ~ 4647880 (-)
LOC117597002 LOC107721237 other upstream 88430 6881382 ~ 6899227 (-)
LOC113526822 LOC108268278 other upstream 1659658 8452610 ~ 8551855 (-)
LOC113526753 LOC108267287,LOC108261139 other upstream 1778544 8571496 ~ 8595625 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other upstream 1846516 8639468 ~ 9528825 (-)
G61478 NA other upstream 2190282 8983234 ~ 8984453 (-)

Expression


Co-expression Network