G60801


Basic Information

Item Value
gene id G60801
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 7580835 ~ 7610190 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU71959
TCTcaagataatgtgtgtgtgtgtgaggagactGCTCGAGTCCTGAGTGCGCTctccaacacaacacacaccgtCTCGTGGATTTAAATACTCACTCCTTGATGCCGAGATCTCTATTAATTCATGTAGCTTTTAGCGCAGAGCAACagagcagggttttttttcagatgaAAGAATGAGCTGAGGGATTTTAGGATGCAATAATTGAAAACaaagatgaaataatgaaacagAACCATTGTTTGGTTGTATTGGTACATTGTTTTAGGTTTTTAAAGACAGCTGAAAAATGGATATTTGTACTACCGTTATGTGATAATCAAAGAAATCCATAGCAAGCCTCTACCATGACATGTTAGGTCGTCTACATCCTAGGATTGGGAGATAAAATATATGATGATACTTGAAAACATTATTATGATACACAGTGCTTGTTGTGCTTTCTCCGGCTTTGCTAACAAATCCCAGACAAAATAATAggttagtattttttaaatacacatacGTATACGTACATATACGTTCAGTGATATTTGTGTTATGAGGCATTTACAGACAAGAGTTTCAATACAACAGTTGGCACAAAAATAGATACTAACATtgtctttgtaacagtcagtatgttttctgccatgcgttttttttttttttttCTTTTGTGGTCACTATCAAAACTGTCGTTAACTTCCTCGTTTTTGAAGGATGTTTATTAAGGCCTGCATATGTCAGCGCACACACTTCAGATGTGCTTCCTCTACAGACAAGAGCTTGGCAGTCAAGGTTCTGAGAGTTATCTGTGAaaacagcatacacacacaagcatacatttttgtagattttttgaGGGAAGctaatttttctttcatgttgtAGGAGTGTAATTGTATACACAATATAGTTTACAGAAAGACATCTGTTTGCCAAATTCcaataatgacatttaaaattatACTGTTTGActtattaaatgttttggaAGGTCATCGCAAATTGAAACATACCAATATCTATATTGCAATATGTTAAAAGCGTAGACGAATCACCAGAGTGTCAAAAATGTTTCCTCACTGTCCAGAGATATATGTGAAGGTCTTTCACTGGCAGATAAGCCGAAAAGAATCACAGCAGCACTTCAAAATCCCTCTGTTTCTTGACAACAGTGTGAACTTTGACCCTTAAAGCTCCATAGGAGCCTATTTTTCCTCCAAGTTCTCCTGCCGAGCCAAAACCTCTTGCTTACTTCTCAGTACCCTGATGTGAGGTTGTCAGGCACAAGGAAAAAGGCCAAATCTGCCCTCCATCTCAGATATCCAGCAACCTTCCAAAGCtccttgacttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71959 True 1343 lncRNA 0.37 2 7580835 7610190

Neighbor

gene id symbol gene type direction distance location
ss18 ss18 coding upstream 50160 7482228 ~ 7530675 (+)
LOC113526462 kctd1,LOC108442723,LOC106534090 coding upstream 138581 7423560 ~ 7442254 (+)
LOC113526768 aqp4 coding upstream 175217 7396810 ~ 7405618 (+)
LOC113526581 LOC108267314,LOC102787731 coding upstream 245918 7237070 ~ 7334917 (+)
sharpin sharpin coding upstream 812099 6759401 ~ 6768736 (+)
LOC113526636 osbpl1a coding downstream 133241 7743431 ~ 7786176 (+)
LOC113526772 ttc39c coding downstream 180637 7790827 ~ 7810568 (+)
cacna1eb LOC108267309 coding downstream 327324 7937514 ~ 8008440 (+)
polr2d polr2d,LOC107671669,LOC107705117,LOC106612892 coding downstream 401780 8011970 ~ 8014519 (+)
abcf3 abcf3 coding downstream 406223 8016413 ~ 8031250 (+)
G60783 NA non-coding upstream 94684 7485766 ~ 7486151 (+)
G60722 NA non-coding upstream 349910 7230651 ~ 7230925 (+)
G60576 NA non-coding upstream 483672 7092397 ~ 7097163 (+)
G60580 NA non-coding upstream 547340 7016087 ~ 7033495 (+)
LOC117596999 NA non-coding upstream 629030 6946325 ~ 6951805 (+)
G60807 NA non-coding downstream 8283 7618473 ~ 7667219 (+)
G60931 NA non-coding downstream 176024 7786214 ~ 7786635 (+)
G61096 NA non-coding downstream 499288 8109478 ~ 8110443 (+)
G61098 NA non-coding downstream 507518 8117708 ~ 8118851 (+)
G61162 NA non-coding downstream 607904 8218094 ~ 8238482 (+)
LOC113547228 NA other upstream 876489 6684336 ~ 6704346 (+)
LOC117597080 NA other upstream 984234 6595126 ~ 6596601 (+)
trnat-ugu_2 NA other upstream 1437033 6143532 ~ 6143802 (+)
LOC113547291 LOC108268023 other upstream 1984610 5579796 ~ 5596225 (+)
LOC113547289 LOC108267851 other upstream 2189006 5388368 ~ 5391829 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other downstream 445866 8056056 ~ 8062839 (+)
LOC117597156 NA other downstream 1085162 8695352 ~ 8724440 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other downstream 1114355 8724545 ~ 9370485 (+)
G61359 LOC108267272,LOC108267273 other downstream 1284280 8894470 ~ 8896729 (+)
rbm14b rbm14b,LOC108267504,LOC108440267,LOC107567604,LOC107728024 other downstream 2148270 9758460 ~ 9774049 (+)

Expression


Co-expression Network