G60846


Basic Information

Item Value
gene id G60846
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 7441262 ~ 7538818 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU72009
acaaacaaacaaacaaaaaaaacacatcccaATGTGTTGAGATCTGTAATAAACCTATTCATGACATTATTAGGAAACAACATCCATGGGTCAATTATATGAAATAgcaaaatatatgcatatttttatatatactgtatatagcactGCAAACAGAACATGATGTCTTAACGTTTGCGTTGAAATTTAATGTATGGAAAGGGACAACGTTTTCAACAAGGTCCTCATCTGGACAGTCCTGATCTTCCCAAAGGTCATCACAGATCATATATAACAAATCCTCACCAAAAAATGCTTTCTTCCTCAagtttccttaaaaaaaaaaatcatttcaagtGTCCCAAAGAGCTCGGCAACTGCTGAAATGTCTGCTCTCTTCATGGCCCGTGTGTggcctttctttccttctttctttctttctttctttctttctttttggaAGTCTGTGAGGCGGTTCTAGAGTTGGGTTCTAGTCCAGCTGCTCCTGTTTTATCCTGTTAGTCTGGAGTCCTCGCTGAGATCTCCGGAGCTCTCGCCGCAGGACGTACTCGCTGAACTGAGACGAGTCGACGCCGCCGCCGCAAGAGCCCACGATCTCGAAGCCGCGCTGCTGTAGTCGCTCCAGGACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72009 True 629 lncRNA 0.42 2 7441262 7538818

Neighbor

gene id symbol gene type direction distance location
dsg2l NA coding downstream 323188 7095820 ~ 7118074 (-)
LOC113526634 NA coding downstream 359262 7049124 ~ 7082000 (-)
prkacbb LOC108411205,LOC108267323,LOC103034112,LOC103396312,LOC102779523,LOC105935432 coding downstream 398473 7021733 ~ 7042789 (-)
exosc4 exosc4 coding downstream 422985 7015028 ~ 7018277 (-)
LOC113526956 NA coding downstream 445802 6989280 ~ 6995460 (-)
LOC113526521 LOC108267321,LOC108436859 coding upstream 158082 7696900 ~ 7727146 (-)
si:ch211-241e1.3 lama3 coding upstream 272837 7811655 ~ 7918897 (-)
rpe65a rpe65,rpe65a,LOC108436856,LOC107705134,LOC107708597,LOC107693590 coding upstream 526384 8065202 ~ 8078853 (-)
efcab14 efcab14 coding upstream 568075 8106893 ~ 8118886 (-)
LOC113526472 NA coding upstream 908565 8447383 ~ 8450998 (-)
G60726 NA non-coding downstream 194826 7242125 ~ 7246436 (-)
G60727 NA non-coding downstream 210358 7230654 ~ 7230904 (-)
G60669 NA non-coding downstream 559927 6878644 ~ 6881335 (-)
G60672 NA non-coding downstream 648310 6785327 ~ 6792952 (-)
G60503 NA non-coding downstream 799077 6641971 ~ 6642185 (-)
G61127 NA non-coding upstream 477138 8015956 ~ 8016183 (-)
G61154 NA non-coding upstream 563626 8102444 ~ 8104225 (-)
G61139 NA non-coding upstream 567074 8105892 ~ 8106414 (-)
G61190 NA non-coding upstream 701170 8239988 ~ 8245664 (-)
G61220 NA non-coding upstream 808338 8347156 ~ 8353286 (-)
LOC117597002 LOC107721237 other downstream 542035 6881382 ~ 6899227 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other downstream 1481717 5900249 ~ 5959545 (-)
cldn1 LOC108268314 other downstream 1947223 5478542 ~ 5494039 (-)
LOC113547297 NA other downstream 2354905 5082808 ~ 5086357 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 2496241 4928360 ~ 4945021 (-)
LOC113526822 LOC108268278 other upstream 913792 8452610 ~ 8551855 (-)
LOC113526753 LOC108267287,LOC108261139 other upstream 1032678 8571496 ~ 8595625 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other upstream 1100650 8639468 ~ 9528825 (-)
G61478 NA other upstream 1444416 8983234 ~ 8984453 (-)
LOC113540087 LOC108267275 other upstream 1776031 9314849 ~ 9327431 (-)

Expression


Co-expression Network