G60931


Basic Information

Item Value
gene id G60931
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 7786214 ~ 7786635 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU72112
tatatatataattctgcAAATTCAACTTATCATAAATTTTCATGTTTCTCAGACATAAAATTTACAGCGAAAGCACAAATCAATTTAACTATGCAatggaaagcttttttttaaaaacgtttGATTAGCTCTATTAAACTCTGCCTGATTCATTCTGGGAAATTGAATTGACTAGTTAGCTGCAGTTTCTTTTGTGGCAGCGTAATGATCTTTACAACAGGGACCCTCTTCAGAGAGTTGACTGGGTTAagtataaatatttactttagGTACTCCTCCTTTTTTCCAGGTACGTTACGATTACCAACAATACCCTCTGTAACGTGTAACACAACAGTAGACTCAGCAGATGCACCTTGTAAAGTACACGTTTTTAATTGTACGATAAAATCTTGAATATGAGTATAAAAGAATAGAAATCA
>TU72113
CATAAAATTTACAGCGAAAGCACAAATCAATTTAACTATGCAatggaaagcttttttttaaaaacgtttGATTAGCTCTATTAAACTCTGCCTGATTCATTCTGGGAAATTGAATTGACTAGTTAGCTGCAGTTTCTTTTGTGGCAGCGTAATGATCTTTACAACAGGGACCCTCTTCAGAGAGTTGACTGGGTTAagtataaatatttactttagGTACTCCTCCTTTTTTCCAGGTACGTTACGATTACCAACAATACCCTCTGTAACGTGTAACACAACAGTAGACTCAGCAGATGCACCTTGTAAAGTACACGTTTTTAATTGTACGATAAAATCTTGAATATGAGTATAAAAGAATAGAAATCA

Function

GO: NA

KEGG:

id description
ko04723 Retrograde endocannabinoid signaling

RNA

RNA id representative length rna type GC content exon number start site end site
TU72112 True 422 lncRNA 0.33 1 7786214 7786635
TU72113 False 369 lncRNA 0.34 1 7786267 7786635

Neighbor

gene id symbol gene type direction distance location
LOC113526636 osbpl1a coding upstream 38 7743431 ~ 7786176 (+)
LOC113526517 znf521 coding upstream 110790 7543681 ~ 7675424 (+)
ss18 ss18 coding upstream 255539 7482228 ~ 7530675 (+)
LOC113526462 kctd1,LOC108442723,LOC106534090 coding upstream 343960 7423560 ~ 7442254 (+)
LOC113526768 aqp4 coding upstream 380596 7396810 ~ 7405618 (+)
LOC113526772 ttc39c coding downstream 4192 7790827 ~ 7810568 (+)
cacna1eb LOC108267309 coding downstream 150879 7937514 ~ 8008440 (+)
polr2d polr2d,LOC107671669,LOC107705117,LOC106612892 coding downstream 225335 8011970 ~ 8014519 (+)
abcf3 abcf3 coding downstream 229778 8016413 ~ 8031250 (+)
si:ch73-140j24.4 LOC108268325 coding downstream 247426 8034061 ~ 8053897 (+)
G60804 NA non-coding upstream 84116 7593320 ~ 7702098 (+)
G60807 NA non-coding upstream 118995 7618473 ~ 7667219 (+)
G60801 NA non-coding upstream 176024 7580835 ~ 7610190 (+)
G60783 NA non-coding upstream 300063 7485766 ~ 7486151 (+)
G60722 NA non-coding upstream 555289 7230651 ~ 7230925 (+)
G61096 NA non-coding downstream 322843 8109478 ~ 8110443 (+)
G61098 NA non-coding downstream 331073 8117708 ~ 8118851 (+)
G61162 NA non-coding downstream 431459 8218094 ~ 8238482 (+)
G61175 NA non-coding downstream 505293 8291928 ~ 8326744 (+)
G61176 NA non-coding downstream 508736 8295371 ~ 8296101 (+)
LOC113547228 NA other upstream 1081868 6684336 ~ 6704346 (+)
LOC117597080 NA other upstream 1189613 6595126 ~ 6596601 (+)
trnat-ugu_2 NA other upstream 1642412 6143532 ~ 6143802 (+)
LOC113547291 LOC108268023 other upstream 2189989 5579796 ~ 5596225 (+)
LOC113547289 LOC108267851 other upstream 2394385 5388368 ~ 5391829 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other downstream 269421 8056056 ~ 8062839 (+)
LOC117597156 NA other downstream 908717 8695352 ~ 8724440 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other downstream 937910 8724545 ~ 9370485 (+)
G61359 LOC108267272,LOC108267273 other downstream 1107835 8894470 ~ 8896729 (+)
rbm14b rbm14b,LOC108267504,LOC108440267,LOC107567604,LOC107728024 other downstream 1971825 9758460 ~ 9774049 (+)

Expression


Co-expression Network