G61162


Basic Information

Item Value
gene id G61162
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 8218094 ~ 8238482 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU72411
cacacacacacacacacacacacacacacacacacacacacacacacacacacgccctagGCAACATGTAGGACCGATTGacattaataatgtgtgtgtttgtaatcttttttttttattaattcttcTCTTAATAGCAGTGAATGTACATGTTTTCCCACTAAATTTACATGCTTATGTCTGAACATTGGCACGTCTGCGAGGCCTTTTTAATCACTAACAGGGCTCTCTGTCATATTTGACGGAGCACTTAGTCACTCTGAGTGTGGTGTCTTATGAAAAAAAGCTTCTCACTCGCTCTGTTCAGTGAGTCAAATTTTGCCAGGAGCTTAAAGGGGCAATTAGGTGAGTCATTAAAGCTACTTGGACATTTGTTGAGGTTCTCTGTGAGAGTCCAAGAGCACATACacgaaaaaaataagaaagaaagagagctcGATTTCTTGCGTATAGAGCGAGTCCGATGAGAAACGTGAGGGAATCCTTGCTGTCCCACCTGCCTGCTTCACTCTCTGCGACTTTGACAGCTGTCGCTCTCTGTTTTATGGGCTACATGTGGATGTAACAACAGTGTCAGTAGCGTCACATCAGTCAaaccctccctctctctctctccctctctctctctctctctctctctctctgaaaccATCCTGTTTAGTGCATGTCAGATTTTTCTACTTCTATAACCGTCGACTCGCCTGCACGCCAACCTTTTTGCACACGGAGAACGTCGAACTCTGGAACGTCTAATAGGAGCAAATAAGGTTGGGATTGAGCTTAAAACGTATTGATTTTTGGCCTAGTAGACACAACATGTAATGCAAGTCATCCTAGATCTCTGAAAGTCAGACGATAGAGCCTTTAAAACAGACCTCAGTAGACATTCTCGACACATTAGCATCATGattgcattaaaatgtgcaCTTGATTAACTGAATTCTGAATGTATTCGTGTTACCTGGTTTTCTCCACGTCTCGTGTCGTTCATCTTTGTACATCTTAAAGGTGCggtcaatgatttttttaagtcagaattattttttctaatatttgCCGAGGTTCTCGGACATGTAGGCAGGTTCAATAAGATAAAGACTCAGGAGAAAAACTCGGACTGTGTTTTAtgaaaatgggagaaaaaaatgcattgcgTGGACCACCTGCCTCCAACCAATCACAACAAAGAGGAATCTACTCATCTTGATCACAGTGGCTGTCAAGTCATTGTCAGCACAAGGTGTGTTTCTTGAGTACAATGAgcattattttcactttgttttgatttcaggTCATGTACTTCTGTTTGTTATGCGCTTTCATTTCcgttctagtcctgtctccgcAACTGTCTCTCCTGATTGAGTGCATGTGTTCTGTGTTAAGCTCTTAATTCATTTGTCTATGTACAGTTTACCCTGCTGTTTAGTAGTTTCGTCGCGAAGTCTTATCATGCACCTGTGTCGTTATGTTCTGAGCCTTGTTTTCCCGTGTTCCCTGTTCTTTGTTTTGTAGttgtacttcctggttttgactaCTGTCTGTTTCACCGATTTCTGCTTAATGGATTTTAATACTGTTTGCAAAGAAATCATTGAGATGTACTATTCAGTTATTTCAGGGACATGGCTTTGTTTTGATTTCAAAACATTTAGCTTCAACTTGCATCAGAATCgctgactgcacctttaagtgtTACAATAGGATACTAGGAGAATGGTGGCTGTTTTTAGACTAAACATTGTGAGTGCAAGGCCATTGTGGAAATATCGGATAAacaataaggggaaaaaaagaaaggaaaaaaaaacacatgtcaAAATCTCAGGGAAAATGTTGCATCATGGACCGAGACTGAGCAGCGAACACACGCATTTTGCTCAGGAAACAAGGAGTGTGTGGGCGGCCGTGTACGTTGTagtcagcagttttttttttttctcgcgTGGTTTTTTAGCTCCTCGGCGAGCTCATGCTGGGTGAGTGACTACTGCCATTAAAGCAGAGAGCTGGGAAATTGGCCACAGAAAATGTAACTGCAGCTCTCTGTTTATCACTGACATTTGAGGAGAGATTAAAACCTCATACACATATTACAGTGATGAATTTCCCAAGGACTCATCTCCATTTTAAAACCGTACCTCTTCATTTTTGCCGTCCATCGCCTCCTCAGAGCCTCGGTTACATAAGAGATGTGGTTAAGAGCGAGCCGCCAGGATGGTGTAAATGCGATGTGTCTTAGGGAAATAGCATGAAGGAATTTTCCTGGTATCGATTACCATGGAAACGCCTCGCAAAATTTGGTCTCCGTGTTTGGTTTCTCTTAAGGGAAATGTTCTGTGCTGCAAATAATGAGCAGCATTTTTGTGTCACAGTGTTGTGGCAGTTTGTGATGCTGTCACACGTTATACAGGCTGAAGTGAAGTGTCTGGAAGTAAGAAGTGCATTTTTGACTCCTGAAGACAGGGAATAAGAAGGAAACGGGGGAAAAAATCTTCATATGAGCTTGAGTGTATGGAGGAGTTCTTCAAGGTTGGAGTGTTTCTCACTCACttactcaagaaaaaaaaaaaacactactgcCTGGCAATTTGAATTTTCCACGACCTCAAAGACACCTTAGCATTCTGAAATACTCGCAGAGGAACAGCCTCAAAAAGCCGTCTCCAGCCGTCTCTATAGATCTCTGGGATGTCATGTGTTTGAAGAAATTGTGTAGTGGAGATACTAGCAGTTTTTAATGAATGTCAAATATTCACACgtaaacaaaaggaaaatgtaattcattaaattattgcaagccaacaaaagaaaatgctcatatattaaaaaaaaaaaaaaaaaccataacaTTATAAAGATAGGTGTCTCAGAAGTAGGTGTCGCAAAATTtcttaaaacaaattttaaacaaatctttaaataaactttcatacattaaatttaaatgttgcATGGCAACAAAGAAaaggttcatttatttattaaaaataaacattgtgaAGCTAGGTGTCTCTAAATTGTGTGTGATATGCAGTGCATCTAAGCAAAAGAGTTAAAACAGgacaaaataatgttaaaacaaACTTGTAAAGCTAGGTGGTTTTTTTGTAATATGCAGCATATCTAAGTGCAGGGTGTCAAACAATATAATGTTACATTAAATGAGGaaacactcatttatttataaaaagctCTGAGAAAAAActtactgttaaaaaaacattgtaaagTTAGGTGTTTAGAATTTTTTAGTAATATAAAGCGTATCTAAGTGTAGGACaatataatgttaatttaaatgtgaaaattttcatttatttataaaaacaaacttgTAAATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72411 True 3344 lncRNA 0.39 2 8218094 8238482

Neighbor

gene id symbol gene type direction distance location
znf830 NA coding upstream 114077 8102405 ~ 8104017 (+)
LOC113526329 LOC108267642,LOC108436873 coding upstream 117029 8085146 ~ 8101065 (+)
si:ch73-140j24.4 LOC108268325 coding upstream 164197 8034061 ~ 8053897 (+)
abcf3 abcf3 coding upstream 186844 8016413 ~ 8031250 (+)
polr2d polr2d,LOC107671669,LOC107705117,LOC106612892 coding upstream 203575 8011970 ~ 8014519 (+)
arhgef11 arhgef11 coding downstream 226823 8465305 ~ 8504653 (+)
vangl2 vangl2,LOC108268029,LOC107686095,LOC107707319,LOC106609014 coding downstream 270651 8509133 ~ 8524288 (+)
si:cabz01074946.1 NA coding downstream 291706 8530188 ~ 8541291 (+)
LOC117597150 LOC107663573 coding downstream 596341 8834823 ~ 8836571 (+)
LOC117597148 LOC107663573 coding downstream 749247 8987729 ~ 8991452 (+)
G61098 NA non-coding upstream 99243 8117708 ~ 8118851 (+)
G61096 NA non-coding upstream 107651 8109478 ~ 8110443 (+)
G60931 NA non-coding upstream 431459 7786214 ~ 7786635 (+)
G60804 NA non-coding upstream 515996 7593320 ~ 7702098 (+)
G60807 NA non-coding upstream 550875 7618473 ~ 7667219 (+)
G61175 NA non-coding downstream 53446 8291928 ~ 8326744 (+)
G61176 NA non-coding downstream 56889 8295371 ~ 8296101 (+)
G61350 LOC108267352,LOC108267722 non-coding downstream 505281 8743763 ~ 8824178 (+)
G61347 NA non-coding downstream 558990 8797472 ~ 8800324 (+)
LOC117597155 NA non-coding downstream 565832 8804314 ~ 8806081 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other upstream 155255 8056056 ~ 8062839 (+)
LOC113547228 NA other upstream 1513748 6684336 ~ 6704346 (+)
LOC117597080 NA other upstream 1621493 6595126 ~ 6596601 (+)
trnat-ugu_2 NA other upstream 2074292 6143532 ~ 6143802 (+)
LOC113547291 LOC108268023 other upstream 2621869 5579796 ~ 5596225 (+)
LOC117597156 NA other downstream 456870 8695352 ~ 8724440 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other downstream 486063 8724545 ~ 9370485 (+)
G61359 LOC108267272,LOC108267273 other downstream 655988 8894470 ~ 8896729 (+)
rbm14b rbm14b,LOC108267504,LOC108440267,LOC107567604,LOC107728024 other downstream 1519978 9758460 ~ 9774049 (+)
gal3st3 gal3st3 other downstream 1568839 9807321 ~ 9832280 (+)

Expression


Co-expression Network