G61190


Basic Information

Item Value
gene id G61190
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 8239988 ~ 8245664 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU72443
GCTAACTAGAAAAGAGAACAGAACAGTATTAAATGAAAAGATGTCCATAGAGGATCATTTAAAAGAACTATCACTAACTCACACTGGCATTACACTCCATTTGCACTTTTATTCCAGTTTAAGTTAGTCTTTATTTCAAAAGAAAGagtaaatgaaaaagaagaagagtaTATTAGTTAACCACGGCGCTCATCTCCACTGGGAGAAAAGCAACACCAAGTGTGGAAGTATGAGAAGTCCATCTAAGCCAAGATCAATTAGGACCAATTCCAAAGTAATTAAAATGTCTGACTAAAGGTCTTTGAACTCGAGACACAGCATTGCGGAGTGAAATTAAACCGCACCACTATCTATGTTCCCACCTGCAAGCACTGATTCAAGGGCTTTTTCATGCTTACTAATGCAaagcaatgacatttttatgcGCTTGGCAATTATGTTCCATGCTGCTCTTTACCAACGCACACCACTGACTGTAGGCTGGGACACTTgacaaatatttaacaataaatcCCTTGGTAAACTGGAGAATGGCAATTCCCTCATGTGGAGAGTGCCATGAGTGCCGCTGGCACAGCAGTAAAGGTGCCACACTGAAGGGATGCGGGTGAAAATCACAGTTGTGCACCGAGGAATACTGAAAGCGTTCTTTCTCATTTGGGATTAGTCAAAAGAGCATAGAGCATCATGTTAATTTCTCTGAAAAGAAACCAGGAATTTTAGTCTAGAGCTGGCCTAATAGTTGATACACTCTAGGTCCATTGGGGAAACATGTGAGcatttgaattttgaaaaaaattgtactgtttttttctgaaatgaattTTCATATCATTACAGACTCTTAATTAAGCATTTCTAGTTAAGTCTGTTCACTCAGCCGCCATCTTGGCGACACTCCCAGGCACGTACTTTGAATTTCTCACGAGTTTAactttaatttgtaattaagtTCTTCAGAATACAAGCTTTACTCTTGTATCATAGCAGAGAAAAAGATCATTTTAGTATTTGATTTGTaggtcatttttaaattttctgcaTGCAACTTATTTTTAATCGCTGATTAGGCCATAGACATTGGCGCACATCTCTTACCGTTAGTTATTTCCAAATAGATCTGGCTAGCTAGATAAGTAACTACTCAAACTGTCTCTGCTCTTAATCTAACTTATTGTCTGATGCTGTTAATGACAgatttgtgggggaaaaaagcaagaagCAAAACATCAGTCTAACATCTTACTAAGAACTTTTTTCCCTTAGCTGAATTTCAAATGGCGTCTACTGGTAAAACAGAGCACTACATATGTGCTACTCTATGTACATtatgttataccctatgtagtgagcatatatagtgaataggatcTGACATAAcagtttgtcagaaaaaaacaatactgtGTGTAACATGGATTACGATTTCAAAAAGTATGATAAAATTCTGTAATTTGACTCTATGtcattttcttctcttcagatattcaaatgcatttgaatagTAAATCTACTTAAAATCTGCATAAGGAATTCTAGGCTCAGTTATTTAACATGAGTTTTAGAAAGGTATGCATAAAATATTTCTCAGCACGCGTCCCTTGCAATATATCTTTCCTCTTTAATGACATTACAGATTACAAATAATATCACAACTCACCCCTTTGCAAAGAAATGAATTTCAAAGCTGCAATTTCAGCTCCCGAGCATCGCACAGCTCCCCAAAAGCTCCATAATAAGGCCATAGAGCAGTGTGTTGACTCAGGACTAGGCCTGGATAAATGAAGTGCCAGAACGGTCCGACCTTGATTTACTCCTACAGCTTCTCCTGTCTCTTCCTTTCCCTTCATCTATAGCTGCTGTGGCCCTGAACAAAAACTCTTAACCCCACATTGCACCAACATGGCACCTCATCATAACGTCTTCTCTGCCCACCCTTACGTGTTCGACTAGAAGATGATGTAGCACTTTCTACTCCTtggttaaataaaagtaaaagaaaacgCATAATGCAAGGAAAATAAGAGACCGTGATGTTGCTTGGTCTGGCTTTGAGCTGATAAAGGAGCAGGAATTAAGTGTCGCCGTCGTGTAAACACCCAGCAGTAGCCGCTGctttaacacacattaataacatttcAAGCAGAAGCCATGTTGCTGTTTACCTTCCCGACTGAGCAGAATGTACTTCATCTAATTGGAGTCcattatttaaaggaaaaaaataataaaactctcCTTGCCGTTTATATGACTTTGGCTATTAGTGAAATAATGACTCGCTCCCTTGAGAATGTTTAAGACTTAGCCATGTGGAGATGCAAAGAGCATCTTGCAATTTCCATAATTAAAACCCACAGCAATCAGCAATCATAATCCCTCTTGCCAAACATCATTCAGGATAGAATTTTGCCCGGGCGATCAGCAGCAGGCTCTCTGGCACAGCCATTGTGCTCAGACAACAACGTTTCCCCCCATCACAGGCCCTTTAGAAACCGAGCCAATCAGCACCAATCAAGAGGAGAAAACGGGTGAATTAGCAAGTCTTGTTGAGGCATTCGCTTTCCTGCAACATAATATTTCAGCATGGTCTTTAGTGATTATCAGGCAAACCCTCAGAGGCAGAAACATGTAATGCAGCCCTGCATTTATTACCGGATCATATCAAAACACCCAAATGTGAGTGTCAACGAGGGCCTGATAgcatataaatattttcttggAATGGGaggcataataaaaaaaaaacatctacaaaaaaattattcatcacTGAAGGGAGGAAAAAACGTAAATATTCTTACACAATTTGAACATCTAATCAGCTGTTTCAGTTTGTAACTGTTAtacaaatattaacatattgGCAATGTTTCAGAAAATGTCATGATTGTTCGTTGGATTTGTATGAATTTCGCATGAGTTCGACTTTAATGCGTAATTGCAGTTGCTTCGTAATACAAGCTTTACTCTTTTATCACAGCAGGGAAAAGGATTGATTTAGCATTTGATTGTAGGTAACTCTTACATTTTCTGAATGCAACTTATTTTTAATCGCTGATTACGCCATAGACGTTGGCATACATCTCTTACCATTAGTTATTTCAAAACagatctggctagctagctaagtaacGCACTTCAGCGCAGAAAAACTAGCGATGAGCACGTAAAAGCAGCGCAAGCACTACATTTTGTTGTCTTGAATCTACTAATGAATTCCATGCCACTCTTTCAACTATCCTTCATTATCAGAAGAATTAATTCTCCACAAAGGGCCATGATTAGTCCATAGATTTCCATAGAAAGGCTCCATCGTATATATACAGGATCTTAATCCTACTCTCATGCAAGCtcttatttaaaatgatgattCATGAGGATGTAGTGGGACGTCAGGATCACGGAGATGAGCAGCGTTTGCCTGTGAGGGATTAGCCTCTCAGCCTGCTACACAGGGGCGTAATCAAACCGTAATGCTCTCCAGCCAGCCTTTAATGCTGTTTCACGGGCATCTTTACAGACAATGATCTACctataaaaaataatctaattaGTGTTCTAATTATTACCCTGGGTGGCATCTTTATGATATAAGGAAATGCAAATATGTGTTTCCTTAGAGTCAGCAAGTAGAAGATGTGCTCTTAATTATTTCCTTAATCCTCATTATCCGCTCTCTGCTTTACACTGGATGTTCTATCAAGTCAGATTAAAGAAATACAATTGTAAGAGGTATTTAAAAAGAGCTTATATGTGTTATCTTCTTCGTAATcagaaggaaaataaacagctttaatGGAAATAGACACCCAAAAGCAGTTGCTGTGTTTGGGGGATCTTCCTGAAGCAGGTGTGTGTACACAAGGTGGGAGTGAAAATAAGAGATGAATGAAGAGTGACAGCCACTGagatcacctttttttttttgtttcaggttAACAGAGACCGCTCATTTATTGTATACACTTCCTTCACACTTGCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72443 True 3987 lncRNA 0.38 2 8239988 8245664

Neighbor

gene id symbol gene type direction distance location
efcab14 efcab14 coding downstream 121102 8106893 ~ 8118886 (-)
rpe65a rpe65,rpe65a,LOC108436856,LOC107705134,LOC107708597,LOC107693590 coding downstream 161135 8065202 ~ 8078853 (-)
si:ch211-241e1.3 lama3 coding downstream 321091 7811655 ~ 7918897 (-)
LOC113526521 LOC108267321,LOC108436859 coding downstream 512842 7696900 ~ 7727146 (-)
dsg2l NA coding downstream 1121914 7095820 ~ 7118074 (-)
LOC113526472 NA coding upstream 201719 8447383 ~ 8450998 (-)
LOC117596993 NA coding upstream 298612 8544276 ~ 8561032 (-)
LOC113526862 LOC108267289 coding upstream 318450 8564114 ~ 8567988 (-)
LOC113524717 LOC107663573 coding upstream 671710 8917374 ~ 8924937 (-)
LOC117597149 NA coding upstream 1123058 9368722 ~ 9377012 (-)
G61139 NA non-coding downstream 133574 8105892 ~ 8106414 (-)
G61154 NA non-coding downstream 135763 8102444 ~ 8104225 (-)
G61127 NA non-coding downstream 223805 8015956 ~ 8016183 (-)
G60846 NA non-coding downstream 701170 7441262 ~ 7538818 (-)
G61220 NA non-coding upstream 101492 8347156 ~ 8353286 (-)
G61275 NA non-coding upstream 175276 8420940 ~ 8495027 (-)
G61286 NA non-coding upstream 234239 8479903 ~ 8550102 (-)
G61301 NA non-coding upstream 255992 8501656 ~ 8504594 (-)
G61310 vangl2,LOC108268029,LOC107707319,LOC107706024 non-coding upstream 277226 8522890 ~ 8525500 (-)
LOC117597002 LOC107721237 other downstream 1340761 6881382 ~ 6899227 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other downstream 2280443 5900249 ~ 5959545 (-)
cldn1 LOC108268314 other downstream 2745949 5478542 ~ 5494039 (-)
LOC113547297 NA other downstream 3153631 5082808 ~ 5086357 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 3294967 4928360 ~ 4945021 (-)
LOC113526822 LOC108268278 other upstream 206946 8452610 ~ 8551855 (-)
LOC113526753 LOC108267287,LOC108261139 other upstream 325832 8571496 ~ 8595625 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other upstream 393804 8639468 ~ 9528825 (-)
G61478 NA other upstream 737570 8983234 ~ 8984453 (-)
LOC113540087 LOC108267275 other upstream 1069185 9314849 ~ 9327431 (-)

Expression


Co-expression Network