LOC113526822 (LOC108268278)


Basic Information

Item Value
gene id LOC113526822
gene name LOC108268278
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 8452610 ~ 8551855 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU72549
ggtgaccgaatacttttggtaatatagtgtatatcattaaaTAACTGCTTCAAACTTGACTCCTTATTATTCATTGTGAAGAGAAAACAGATGTAGCTAAGCAAAACTAGtgaattagccagctagcttagtgttttcatttaaactaaCTGCTAACTGCTGTATGAATCAACTTCACAAGTTGAGCAACGTGAATTAGCTTACTTGTATAGTGCAGCTTCAATATATGATGCTAGCATTCTGCTAACACCAGCTGGTTAGCTTATCTTGTTACTAGCGAGCCATTaggctgttagctagctacctcTAGTAAGGTCAATCACTCTTCATTTGTAGTCCAAGTACATTTGTGCCTTTTTTGTGACTTGCCAATATGAGTAAAAGAAAAGCAAGATTCTTTCTCAGATATCAGTTAAGATCTAGCTGGCTAGAATTACCCAGCGAGAATTTTCCTAAAGTACTTGAAAAAGTCATGATAATTGGTTCACAAGCTAATCCCCAGCACTCCTCCCTTCCTGAATGTCATTATATTTTCCATGATAATGTTTCAAGAGttgaaatattgtgatatattgcAGAATTGATTATCGGTGAATGCCTGATGTCTACCACTGTTGCCTTTATGTGAAAGATCCACATGTTGAACTGTGCCTGTATGtatttgtgctgttttgatGCGAAGTCTATATCTATCTCATTCATATGATATCTTTGCCTCACGATGTTTGCTTTTTACACTGTTGCCTTTATACTGTTTGCCTTTATGAgagattcacacacactgctgagctGAGACAGAAGCTGAACTGTACGTATGAATCCTGTACccattatattcatataatctTTATCTGTACAAGTTACATGCTTTATACAGTATTAAATGACTGAATTTGAAATTTTGTTTTAATCCAGTGCATTACCCTGCTGGGAAAAAACCCCCATTAGgattagaaatattttatggTTTCCTTTATGTAATAGACTTTAATGGGAATTCAGTgaatttcatcattttcttaAAGGTTTCCATTTTGGGCTACTACTAAATAACAGCAGAAACATATTGCGTCTTCCATGCATAAATGATCACCATTAGAATAAAATTGGATAAGCCATCAGGAACCATTAGAAACAACACCGTCCATTAAGCTACCATTACACAGCACCATAAactcattcaaacattttttttccagcagggtAGTAAAGCAGCGTCAACTGAATAATGTAGAAATC
>XM_026914208.2
GTTTTAATTGCCTATCAGTCCTGGAAAGGAAGAGAAGCAGAGCACAGTCTGGGGAAGATTTCTCACATACCACACCGATCTACTGCTAAAAAAAAGCTTGATAACACAGAAAAACAGGCGGAAGAGTTTTCCCTGAAGACCAGATTACAAGTCTCCCTGCACCAATCAGAGAAAGGGATTTATGGTTTCCACTCTGCACGGCATTGGACCAACAGCTTTGATTAAATCTTATTGACATTAGCTGACTTTGACAAAGTTGAAAGAATCCATCATCCATTTCCAATCATGCCCTTGGTTGTGCTGCAGACCTCGCGCCTGATGTGGGCCCGTCTGGCCGCGCTGGTGTTCACATGTGTGGCATTCAGCGTGGCCGCTCATGGTGCACATCTGGCTGGCGGCATGTACGACTGGTGCATGTTCTGCTGGGTTTTCAGCTTCATCGGCACGCTGTTGGTGCTAATTGTGGAGCTCCTGAGCCTTCAGTCGCGTACGCCTGTCTCGTGGACCAACTTTCCCATCACACTGGCGTGCTACGCAGGTCTGCTCTGCCTTTCCGCTTCCGTCATCTTCCCACTGTACTTCCTGAAGGGCTACTCTGGCTATAACAATGAGATACGTGACTACAGGATCGTCAGCACTGTTTTCTCCTGCCTGGCCACAGTGGCATACCTAGTGGAGGTGAGCCTGACGCGGGCGCGCCCTGGTGAAGTGGCTGCCTATATGGCGACGGTGCCCGGCCTCCTGAAGGTCTGCGAGACATTCGTAGCTagtgttatttttgtgtttatcaGTAATCCTGTGTCATATGATCATCACCCGGGATTAAAGTGGTGCATGGCTGTGTACTGTATCTGCTTCATCATATCCGCTGGCATCGTGGTGATGTGCGTCGGAGAGTGTACAGGCTTCCTTCCATTCCCGTTTGCCCGTTTCCTGTCCGCTTATGCCTTATTGGCTGTTGCGATGTACCTCTCTGCTACCATCATCTGGCCCGTGTTCCAGTTCGACAGCCATTACAGAGGTCAGTCTCAGAGGCCCAGTGGATGCCGTAACACTCAGGGTCTCTGCGATTGGGATAAACTGGTGATCATAGCCGTTCTGACAGGCCTTAACTTCCTGATCTACGTAGCAGATCTAGTGTACTCTGCACGACTCGTGTTTGTCCGTGCTTGAAAAGTCGAAATGACAAGAAGAGCCAGTGAATGTTTAATCTTTTCACCAGGGATGTTCCGATAGTCAATTTTCATATCATGAAATTTCCTCTATAAATCTAAATGGAATTGTGGGATTAGAGTGGAAATTTGGCCAAAATAGGCATATACCctaaagaaattaaaaacaagacattaaacggttattaaaaattataccTGCTTATAaattttaatgataaattaaatttcaataCGTTTCTCCAGTCATgtcagaaagacacacacacacacacacacacacatatatatatttaatatatatatatcattaaaTAACTGCTTCAAACTTGACTCCTTATTATTCATTGTGAAGAGAAAACAGATGTAGCTAAGCAAAACTAGtgaattagccagctagcttagtgttttcatttaaactaaCTGCTAACTGCTGTATGAATCAACTTCACAAGTTGAGCAACGTGAATTAGCTTACTTGTATAGTGCAGCTTCAATATATGATGCTAGCATTCTGCTAACACCAGCTGGTTAGCTTATCTTGTTACTAGCGAGCCATTaggctgttagctagctacctcTAGTAAGGTCAATCACTCTTCATTTGTAGTCCAAGTACATTTGTGCCTTTTTTGTGACTTGCCAATATGAGTAAAAGAAAAGCAAGATTCTTTCTCAGATATCAGTTAAGATCTAGCTGGCTAGAATTACCCAGCGAGAATTTTCCTAAAGTACTTGAAAAAGTCATGATAATTGGTTCACAAGCTAATCCCCAGCACTCCTCCCTTCCTGAATGTCATTATATTTTCCATGATAATGTTTCAAGAGttgaaatattgtgatatattgcAGAATTGATTATCGGTGAATGCCTGATGTCTACCACTGTTGCCTTTATGTGAAAGATCCACATGTTGAACTGTGCCTGTATGtatttgtgctgttttgatGCGAAGTCTATATCTATCTCATTCATATGATATCTTTGCCTCACGATGTTTGCTTTTTACACTGTTGCCTTTATACTGTTTGCCTTTATGAgagattcacacacactgctgagctGAGACAGAAGCTGAACTGTACGTATGAATCCTGTACccattatattcatataatctTTATCTGTACAAGTTACATGCTTTATACAGTATTAAATGACTGAATTTGAAATTTTGTTTTAATCCAGTGCATTACCCTGCTGGGAAAAAACCCCCATTAGgattagaaatattttatggTTTCCTTTATGTAATAGACTTTAATGGGAATTCAGTgaatttcatcattttcttaAAGGTTTCCATTTTGGGCTACTACTAAATAACAGCAGAAACATATTGCGTCTTCCATGCATAAATGATCACCATTAGAATAAAATTGGATAAGCCATCAGGAACCATTAGAAACAACACCGTCCATTAAGCTACCATTACACAGCACCATAAactcattcaaacattttttttccagcagggtAGTAAAGCAGCGTCAACTGAATAATGTAGAAATCCAGGaagtatgtgtgtttttttaagcatATCCAGACTTGAGTTTAAAGTCTCGTATGTTTCAGTGttaagtgaataaaaatgtcacatGTTTGAGCTTGTTGCACTCTGCCGCATTTATGGATGCCAAAGTTCAGTGTTTAAATTTATAACAATCATAAAGTTTTGCATTTTAAGTACCAAA

Function

NR:

description
PREDICTED: myeloid-associated differentiation marker homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72549 False 1239 lncRNA 0.36 2 8452792 8551855
XM_026914208.2 True 2867 mRNA 0.41 3 8452610 8462244

Neighbor

gene id symbol gene type direction distance location
LOC113526472 NA coding downstream 1612 8447383 ~ 8450998 (-)
efcab14 efcab14 coding downstream 333724 8106893 ~ 8118886 (-)
rpe65a rpe65,rpe65a,LOC108436856,LOC107705134,LOC107708597,LOC107693590 coding downstream 373757 8065202 ~ 8078853 (-)
si:ch211-241e1.3 lama3 coding downstream 533713 7811655 ~ 7918897 (-)
LOC113526521 LOC108267321,LOC108436859 coding downstream 725464 7696900 ~ 7727146 (-)
LOC113526862 LOC108267289 coding upstream 12259 8564114 ~ 8567988 (-)
LOC113524717 LOC107663573 coding upstream 365519 8917374 ~ 8924937 (-)
LOC117597149 NA coding upstream 816867 9368722 ~ 9377012 (-)
LOC113540032 NA coding upstream 832130 9383985 ~ 9389481 (-)
kcnj10a kcnj10,LOC108440277,LOC107728032,LOC107703868,LOC100697257,LOC102205965 coding upstream 839148 9391003 ~ 9412913 (-)
G61220 NA non-coding downstream 99324 8347156 ~ 8353286 (-)
G61190 NA non-coding downstream 206946 8239988 ~ 8245664 (-)
G61139 NA non-coding downstream 346196 8105892 ~ 8106414 (-)
G61154 NA non-coding downstream 348385 8102444 ~ 8104225 (-)
G61127 NA non-coding downstream 436427 8015956 ~ 8016183 (-)
G61445 NA non-coding upstream 176499 8728354 ~ 8738480 (-)
G61464 NA non-coding upstream 327342 8879197 ~ 8880736 (-)
LOC117597151 NA non-coding upstream 336302 8888157 ~ 8893055 (-)
LOC117597240 NA non-coding upstream 442040 8993895 ~ 8994106 (-)
G61482 NA non-coding upstream 469455 9021310 ~ 9235924 (-)
LOC117597002 LOC107721237 other downstream 1553383 6881382 ~ 6899227 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other downstream 2493065 5900249 ~ 5959545 (-)
cldn1 LOC108268314 other downstream 2958571 5478542 ~ 5494039 (-)
LOC113547297 NA other downstream 3366253 5082808 ~ 5086357 (-)
LOC117597188 LOC108262218,LOC108262433 other downstream 3507589 4928360 ~ 4945021 (-)
LOC113526753 LOC108267287,LOC108261139 other upstream 19641 8571496 ~ 8595625 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other upstream 87613 8639468 ~ 9528825 (-)
G61478 NA other upstream 431379 8983234 ~ 8984453 (-)
LOC113540087 LOC108267275 other upstream 762994 9314849 ~ 9327431 (-)
G61537 NA other upstream 785971 9337826 ~ 9338745 (-)

Expression


Co-expression Network