LOC113539869 (LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722)


Basic Information

Item Value
gene id LOC113539869
gene name LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 8724545 ~ 9370485 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU72653
CAGTGATCCTGTTACACTCtctgtatcagAAAAACCTAAACCTGAACTCACATCAGACCTTAAAGGAGCTGCACTGACAGGAAACTCAGTGACTCTGTCCTGTACACTGAAGCTGCAGTCTGCTGGATGGAAGTTTTACTGGAACAAAGACACACAGCGCCGTCAGACTGAGACTGCAACACACTCCTACACCATCAGATCAGTTACAGTCTCTGATAGAGGTCAGTACTGGTGCAGAGCTGGAAAAGGAAACCCAGTCTACTACACAGACTACAGTGATGCACTGTGGGTAAATGTTATTGagaatCCTAAACCTGTGGTGATTATAAAGCCTGATACACAGGtgttcagaggagagagagtgacttTCAGGTGtgacatacagagaggaggagacact
>TU72656
GTTAGAGTCTCTGATGGAGGTCAGTACTGGTGCAGAGCTGGAAAAGGAAACCcagtacactacacacactacagtgatgCACTCTGGGTAAACGTTATTGcgaATCCTAAACCTGTGGTGATTATAAAGCCTGATACACAGGTGTTCAGAGGAGAGACTGTGACTTTCAGGTGtgacatacagagaggaggaggcACTGAGTGGACATACAGCTGGAATAAGAATGATTACAC
>TU72737
GTCTCTGATGGAGGTCAGTACAAGTGCAGAGCTGGAAGAGGAAACCCagtctactacacacactacagtgatgCACTCTGGGTAAATGTTACTGagagtCCTAAACCTGTGGTGATTATAGAGCCTGATACACAGGtgttcagaggagagagagtgacttTCAGGTGtgacatacagagaggaggagacactGAGTGGACATACAGCTGGAATAAGAATGATTACACACTCTACTCagac
>XM_034303874.1
agagagtgagtgtgtatgaggagTTATAAACTGATAACAGagaGTCCTAAACCTGTGGTGTCTATAAAGCCTGATACACAGGtgttcagaggagagagagtgacttTCAGGTGTGACATACAGGAAGGAAGAGGCACTAAGTGGACATACGACTGGTATAGGGACAATTCCACATTCTACACATCCCACACAACACAGGAGTTCAGCATCTCTGTTAGAAATGATCACGGTGGTAAATACACCTGCAGAGGGAGGAGAAGTGactctcagagctcagagacgAGTGATCCTGTTACACTCTCTGTATCAGAAAAACCTAAACCTGAACTCACATCAGACCTTAAAGGAGCTGCACTGACAGGAAACTCAGTGACTCTGTCCTGTACACTGAAGCTGCAGTCTGCTGGATGGAAGTTTTACTGGATCAAACCCACACAgagcactgagactgagactgaaacacactccTACACCATCAGATCAGTTACAGTCTCTGATAGAGGTCAGTACTGGTGCAGAGCTGGAAGAGGAAACCCagtctactacacacactacagtgatgCACTCTGGGTAAATGTTATTGagaGTCCTAAACCTGTGGTGTCTATAAAGCCTGATACACAGGTGTTCAGAGGAGAGAATGTGACTTTCAGGTGtgacatacagagaggaggagacactGAGTGGACATACGACTGGTATAGGGACAATTCCACATTCTACCCATCCCACACAACACAAGAGTTCAGCATCTCTGTTAGAAATGATCACGTTGGTAAATACACCTGCAGAGGGAGGAGAAGTGACTCTCAGATCTCAAAGACGAGTGATCCTGTTACACTCtctgtatcagAAAAACCTAAACCTAAACTCACATCAGACCTTAAAGGAGCTGCACTGACAGGAAACTCAGTGACTCTGTCCTGTACACTGAAGCTGCAGTCTGCTGGATGGAAGTTTTACTGGATCAAACCCACACAGAGCACTGAGACTGAAACTGCAACACCCTCCTACACCATCAGCTCAGTTAGAGTCTCTGATGGAGGTCAGTACTGGTGCAGAGCTGGAAAAGGAAACCcagtacactacacacactacagtgatgCACTCTGGGTAAACGTTATTGcgaATCCTAAACCTGTGGTGATTATAAAGCCTGATACACAGGTGTTCAGAGGAGAGACTGTGACTTTCAGGTGtgacatacagagaggaggaggcACTGAGTGGACATACAGCTGGAATAAGAATGATTACACACTCTACCCATACAGAACAACACAGCAGTTCAGCATCAGCTCAGTTACAGACTCTGACGGTGGTAAATACACCTGCAGAGGGAGGAGAAGAGACTCTCAGATCTCAGAGACGAGTGATCCTGTTCCACTCtctgtatcagAAAAACCTAAACCTGAACTCACATCAGACCTTAAAGGAGCTGCACTGACAGGAAACTCAGTGACTCTGTCCTGTACACTGAAGCTGCAGTCTGCTGGATGGAAGTATTACTGGATCAAACCCACACAgagcactgagactgagactgcaACACACTCCTACACCATCAGCTCAGTTAGAGTCTCTGATGGAGGTCAGTACAAGTGCAGAGCTGGAAAAGGAAACCCagtctactacacacactacagtgatgCACTCTGGGTAAATGTTATTGagaatCCTAAACCTGTGGTGATTATAAAGCCTGATACACAGGtgttcagaggagagagagtgacttTCAGGTGtgacatacagagaggaggagacactGAGTGGACATACGACTGGTATAGGGACAATTACACATTCTACCCATCCCACACAACACAGGAGTTCAGCATCAGCTCAGTTACAGATTCTGACGGTGGTAAATACACCTGCAGAGGGAGGAGAAGTGACTCTCAGATCTCAAAGACGAGTGATCCTGTTCCACTCtctgtatcagAAAAACCCAAACCGACTGTGAGTGTGAATCCTCAGAGCTCCGTCTACACTGGAGACAGAGTTACTCTGAGCTGTAATCTGCTGTCTACTGGATGGACTTTTCTCTGGTACCAAGATTATTGGCAATTAAAACCTCTGACCTCTGTAGCTACAGTGACCAACACACTCGATGTAACAGTCTCTAATGAAGGACAAATAAATTACTACTGTGTAGCACGCAGGGGAAACTATGACTCAGAGTTCAGTTATCCAGCAACGATTACAGTGAGAGCGAGACTAAAGCCTGTAGTGAAAGTAAAGCCAGCTAAGCGTGTGTTCATTGGGGAAACCGTCACTTTCTCATGTGAGATACAGACTGGAGGATACTGGCAGTATCACTGGTATAGGGATGATAATGAACTCAGAGATGCtgcagtaaagaaaacatacacaATCTCTAATGTTAAAGTATCTGATGAAGGTGATTACACATGTAGAGGAACGAAGTCATCAGacccaaaatacacacagaccagtgatgctgttacactgactgtatcagAAAAACCTAAACCTGAACTCACATCAGACCTTAAAGGAGCTGCGCTGACAGGAAACTCAGTGACTCTGTCCTGTACACTGAAGCTGCAGTCTGCTGGATGGAAGTTTTACTGGACCAAACCCACACAgagcactgagactgagactgaaacacactccTACACCATCAGATCAGTTAGAGTCTCAGATGGAGGTCAGTACAAGTGCAGAGCTGGAAGAGGAAACCCagtctactacacacactacagtgatgCACTCTGGGTAAACATTATTGagaATCCTAAACCTGTGGTGATTATAGAGCCTGATACACAGGTGTTCAGAGGAGAGACTGTGACTTTCAGGTGtgacatacagagaggaggaggcACTAAGTGGACATACAGCTGGAATAAGAATGATTACACACTCTACCCATACAGAACAACACAGGAGTTCAGCATCAGCTCAGTTACAGACTCTGATGGTGGTAAATACACCTGCAGAGGGAGGAGAAGTGactctcagagctcagagatCAGTGATCCTGTTACACTCTCTGTATCAGAAAAACCTAAACCTGAACTCACATCAGACCTTAAAGGAGATGTACTGACAGGAAACTCAGTGACTCTGTCCTGTACACTGAAGCTGCAGTCTGCTGGATGGAAGTTTTACTGGAACAAAGACACACAGCGCCGTCAGACTGAGACTGCAACACACTCCTACACCATCAGATCAGTTAGAGTCTCTGATGGAGGTCAGTACAAGTGCAGAGCTGGAAGAGGAAACCCagtctactacacacactacagtgatgACCTCTGGGTAAACGTTATTGagaatCCTAAACCTGTGGTGATTATAGAGCCTGATACACAGGtgttcagaggagagagagtgacttTCAGGTGTAAtatacagagaggaggagacactGAGTGGACATACAGCTGGAATAAGAATGATTACACACTCTACCCATACAGAACAACACAGGAGTTCATCATCAGCTCTGTTACAGACTCTGACGGTGGTAAATACACCTGCAGAGGGAGGAGAAGTGACTCTCAGATCTCAAAGACGAGTGATCCTGTTACACTCTCTGTATCAGAAAAACCCAAACCGACTGTGAGTGTGAATCCTCAGAGCTCCGTCTACACTGGAGACAGAGTTACTCTGAGCTGTAATCTGCTGTCTACTGGATGGAAGTTTTTCTGGtacaaaaatgatcagaaatcaAATCCGTTGTCCCCTGAGGCAACCGACACCAACACACTCAGTGTGACCGTCTCTAATGAAGGACAAATAAATTACTACTGTAAAGCACGCAGGGGAAACTACGACTCAGAGTTCAGTGATCCAGCCACGATTACAGTGAGAGCGAGACCAAAGCCTGTAGTGAAAGTACAGGCAGCTGAGCCTGTGTTCATTGGGGAAACCGTCATTTTCTCATGTGAGATACAGACTGGAGGATCCTGGCAGTACCACTGGTATAGAGATAATAAAGAACTCAGAGATGCTGCAGGAAATAATCAATACACAATCTCTGATGTTAAAGCCTCTGATAAAGGTGATTATACATGTAGAAGAACAAAGTCATCAGacccaaaatacacacagaccagtgatgctgttacactgactgtatcagAAAAACCTAAACCTGAACTCACATCAGTCCTTAAAGGAGCTGCGCTGACAGGAAACTCAGTGACTCTGTCCTGTACACTGCAGCTGCAGTCTGCTGGATGGAAGTTTTACTggaacaaagacacacagagcactgagactgagactgaaacacactccTACACCATCAGCTCAGTTAGAGTCTCTGATGGAGGTCAGTACAAGTGCAGAGCTGGAAGAGGAAACCCagtctactacacacactacagtgatgCACTCTGGGTAAATGTTACTGAGAGTCCTAAAGCTGTGGTGACTATAAAGCCTGATAAACATGTGTTCAGAGGAGAGACTGTGACTCTCAGATGTGAAATACAGGGAGGAGGAGACACTGAGTGGACATACAGCTGGTATAagaacaattacacacaatacCCCAGAACACAGGAGCTCAGCATCAGCTCAGTTAGAAATTATGACAGTGGTACATATACCTGCATAGGGAGGAAGAGCAGTGACTATCAGAGCTCAGAGATCAGTGATGCTGTTCCACTCactgtatcagATGCAGCAGAAGCAGTAGTGCATGTGTCTCCACTGAGCTGGCTGACTGAAGGAGACTCAGTGACTCTAAGCTGTGAGGTTAAACACTCCTCTACAGGCTGGACATTCAGCTGGTACACAGAGATTCCCTACAGAGACAGTCAGGGTTCCCTCAGGTTCAATACAGTGCTCctctcagacagcagcagaggatcTGGAGGCTCCTACACTCTCAGTCCAGTTACTCTGAATCACACAGGAGTTTATATGTGCATAGCAGAGAGAGGAGAACGAGTCTTTTACTCACAGTACAGCAACATAAAGCCACTGTGGatcactggtaaATCTCCTCCAATGTCTCTGATCATCAGTCccagcagaactcaacactttaCTGCTGAgtctctctcactgagctgtGAGGACCAGAGTGACTCTCCTGGATGGACAGTGAGAGGATACACACACAGCGAGACATTGTTCGATTGTTCATCAGTTTCAGGATCTACATGTAACATCAGCTCCctctctacatcacacactggaGTTTACTGGTGTCAGTCTGGATCTGGAGGACGCAGTAATCCTGTCAACATCACAGTGCACAATGGTGATGTGATCCTGGTCAGTCCTGTCCATCCTGTAACTGAAGGACATCCTCTGACTTTACGCTGTTTATATCGCAACCCAAAGATCTCAGACTCTGTTGCTGatttctataaaaataatttagtcCTCCAGAACCAGACTAAAGGAGAGATGACCATCCACACTGTCTCAAAGTCAGATGAaggtttctaccactgtaaacacacaaagaGAGGAGAGTCACCGAAAAGCTGGGTTTCAGTCAGCATTCAAAtCTCAGGTTCTGGATCCAATATTGTTATAGTATTTGTGGCTGTGGGACTGAGTTTGACCTTGCTGTTCATCTTTCTTTTACTGATCCTGCTGTGGTGGCACAAATCCAACAAAGGAAaggacagagacacacagcagaACATCAATCAGACACCAGGTCAGAATCTGAGTCAGTCAGGAGCTGAGGATTCTCAGTCAGGATACACACCATTTCAGACCAGAGCTGAGGACTCGCAATCAggatacacaccactgcagaccgGTGATGCTGCAGCTGAACCCTGTGGGGCCATTTATGCACAGgtcatgaagaaaaatgaacCATACAAGAATAAAGATGATGATGCTGGACCCAGTGATGTGACTTACGCTGAGCTTGAACTCAAGCCACAGAAAAAAGCAAGGAAAAATCAAGTGAAGGCCAATGTAGATTCTGAAACTGTTTATTCAGAGCTGAAGCAGAACAAATAGATTGTGAAAAATACAGAGACGGTGAGATGATGGTGGAGAAAAGGATTAGATTTTACATATATAAGGTATCCAAAATACTTCCACACAACTGAAACAAATGCCAAAAATGTATGTCTTTGGTTGCTTAATACCAAGAAAGCCTAAGCTGAGTGCACCAACTGTGGCTGTAATGTAACATATCTTCCAGACTCTAtcgttttattgcatttttattgcacTGTGACAAGCCTGTTTGAAGGCTCATGTGCACAGAGCATACAGTTTTATCTCCAGCAAATGTCTCTACTTGCCTCTATCCATGTGGACATATGTAGCATCAGTATATGTAAAGTTAGAGGTGCTCAGTACAGTGCAATCTCTCAATTTATTTCCATACTGTTAAAGCTTGgaattgtaatttattattattattattttttatttgtaagcaTTTCAGTACTTTTGTACTTTTCAGTTGCTACTTTGATTTGATGAACTGCTGATTTTCTTAAGGGCATTGTTCACTGATTCACCTCCAGTAGCTTAACAATGACATCCTATGAACCAATGCAAGAATTCATTCTTATGCATCATTATAATTGTAATATACAAGAATAATAACTACAAGTATTGCAGTATAAATCATCAACTCTGTTTTTCATTGATATTTTGAATTCTAGCAATACTGTACATCTGCAGCAAACAGATTATAAACAGAGGtcactttgtttaaaatgtggcCAAAGATAAACAGACAGCATGAAAAATTTCAGATCAGGAAATCTGATCATGGAGAAATCTCCACGCATCACGGAGACTGAGAATAGTCAGTCTGCTGTAAGATATTGCAAACTACAAAAATGCTTTCatgtattttctgtataaaGGGgttcattttattacttttatacatGTGTCAAGAGCTTAAAACAGTGCCATCTTCTGGGTATAATTcataaatctaatataaaaatCTATGCATTATTAAATTCtatatgtttgaaaatgtacatttttacctttatgttttaaatttgtgggtttttgtaaatgtaaactctACAAACTGCTCTTGGACCTGTTCctcaaatatattttgaaaagga

Function

NR:

description
PREDICTED: Fc receptor-like protein 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72653 False 400 lncRNA 0.46 3 8724545 9037722
TU72656 False 233 lncRNA 0.46 2 8812930 8813927
TU72737 False 240 lncRNA 0.46 2 9241937 9243155
XM_034303874.1 True 7055 mRNA 0.44 27 8784945 9370485

Neighbor

gene id symbol gene type direction distance location
si:cabz01074946.1 NA coding upstream 183254 8530188 ~ 8541291 (+)
vangl2 vangl2,LOC108268029,LOC107686095,LOC107707319,LOC106609014 coding upstream 200257 8509133 ~ 8524288 (+)
arhgef11 arhgef11 coding upstream 219892 8465305 ~ 8504653 (+)
LOC113526595 LOC108267854,LOC108436868 coding upstream 368015 8231180 ~ 8356530 (+)
znf830 NA coding upstream 620528 8102405 ~ 8104017 (+)
pnp5a LOC108267282,LOC103368940,LOC107692836,LOC108440276,LOC107747996,LOC107728028 coding downstream 58240 9428725 ~ 9434604 (+)
sf3b2 sf3b2,LOC107692835 coding downstream 257263 9627748 ~ 9641910 (+)
LOC113539871 LOC108440271 coding downstream 278819 9649304 ~ 9707936 (+)
LOC113540385 klc2,LOC102775952,LOC107728029 coding downstream 342098 9712583 ~ 9723961 (+)
LOC113539763 LOC108267503,LOC108440269 coding downstream 354244 9724729 ~ 9746048 (+)
G61175 NA non-coding upstream 397801 8291928 ~ 8326744 (+)
G61176 NA non-coding upstream 428444 8295371 ~ 8296101 (+)
G61162 NA non-coding upstream 486063 8218094 ~ 8238482 (+)
G61098 NA non-coding upstream 605694 8117708 ~ 8118851 (+)
G61096 NA non-coding upstream 614102 8109478 ~ 8110443 (+)
G61600 NA non-coding downstream 78558 9449043 ~ 9456160 (+)
G61638 NA non-coding downstream 207879 9578364 ~ 9592743 (+)
G61689 NA non-coding downstream 510583 9881068 ~ 9968900 (+)
G61696 pfdn2,LOC103133045,LOC103145934,LOC107745204 non-coding downstream 543750 9914235 ~ 9918783 (+)
LOC113540370 NA non-coding downstream 654100 10024585 ~ 10096068 (+)
LOC117597156 NA other upstream 105 8695352 ~ 8724440 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other upstream 661706 8056056 ~ 8062839 (+)
LOC113547228 NA other upstream 2020199 6684336 ~ 6704346 (+)
LOC117597080 NA other upstream 2127944 6595126 ~ 6596601 (+)
trnat-ugu_2 NA other upstream 2580743 6143532 ~ 6143802 (+)
rbm14b rbm14b,LOC108267504,LOC108440267,LOC107567604,LOC107728024 other downstream 387975 9758460 ~ 9774049 (+)
gal3st3 gal3st3 other downstream 436836 9807321 ~ 9832280 (+)
si:ch211-168d1.3 LOC108267908,LOC108440265 other downstream 490409 9860894 ~ 9882713 (+)
G61786 LOC108267738,LOC108267931,LOC108267740,LOC108267937,LOC108267932,LOC108267739,LOC108267929,LOC108267241 other downstream 797361 10167846 ~ 10266279 (+)
trnak-cuu_13 NA other downstream 1104283 10474768 ~ 10486042 (+)

Expression


Co-expression Network