G61359 (LOC108267272,LOC108267273)


Basic Information

Item Value
gene id G61359
gene name LOC108267272,LOC108267273
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 8894470 ~ 8896729 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU72678
TCTCTTTCCTACAGATGGTGATTTGATCCTGGAGAGTCCTGTCCATCCTGTAACTGAGGGAAATCCTCTGACTTTACGCTGTTTAAATCGCTCAAAGATCTCAGACTCTGGTGCTGATTTCTATAAAAATGATTCCATCCTCCAGTCCCAGACTAAAGGAGAGATGACCATCAGTAGTGTATCAAAGTCAGATGAaggtttctaccactgtaaacacccagagagaggagagtcacCGAAAAGCTGGGTTTCAGTCAGAGTTTCAGCTTCTGGATCCACTGGTGTAATTATAGGACTGAGTTCGGCCTTCGTGTTTGTCATCTTAATGATCTTATTGATTCTGCTGTTGCACCACAAGAAGAAAAGAGGTGTAGAATATCAGACTCCTTCTGCTGTAAATCAGGACACCAATCAGCCTGCAGaTGGTGATAACATCTACGAAAATACTAATATCAGAACCACAGATGATTCTGCAGCTGAAGCCAGCAATATGCTCTACTCAGAGGTTGTCACTaggaagaagaaacaaaaggGTAAGAATACTGCATGCAACTA

Function

NR:

description
piwi-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72678 True 555 TUCP 0.43 5 8894470 8896729

Neighbor

gene id symbol gene type direction distance location
LOC117597150 LOC107663573 coding upstream 57899 8834823 ~ 8836571 (+)
si:cabz01074946.1 NA coding upstream 353179 8530188 ~ 8541291 (+)
vangl2 vangl2,LOC108268029,LOC107686095,LOC107707319,LOC106609014 coding upstream 370182 8509133 ~ 8524288 (+)
arhgef11 arhgef11 coding upstream 389817 8465305 ~ 8504653 (+)
LOC113526595 LOC108267854,LOC108436868 coding upstream 537940 8231180 ~ 8356530 (+)
LOC117597148 LOC107663573 coding downstream 91000 8987729 ~ 8991452 (+)
LOC113540089 NA coding downstream 432606 9329335 ~ 9332782 (+)
pnp5a LOC108267282,LOC103368940,LOC107692836,LOC108440276,LOC107747996,LOC107728028 coding downstream 531996 9428725 ~ 9434604 (+)
sf3b2 sf3b2,LOC107692835 coding downstream 731019 9627748 ~ 9641910 (+)
LOC113539871 LOC108440271 coding downstream 752575 9649304 ~ 9707936 (+)
LOC117597153 NA non-coding upstream 60445 8833213 ~ 8834025 (+)
G61350 LOC108267352,LOC108267722 non-coding upstream 70292 8743763 ~ 8824178 (+)
LOC117597155 NA non-coding upstream 88389 8804314 ~ 8806081 (+)
G61347 NA non-coding upstream 94146 8797472 ~ 8800324 (+)
G61175 NA non-coding upstream 567726 8291928 ~ 8326744 (+)
LOC113524706 NA non-coding downstream 13931 8910660 ~ 8915841 (+)
G61377 NA non-coding downstream 102793 8999522 ~ 9050524 (+)
LOC117597154 NA non-coding downstream 270827 9167556 ~ 9169479 (+)
G61519 LOC108267275 non-coding downstream 418130 9314859 ~ 9317134 (+)
G61520 NA non-coding downstream 423432 9320161 ~ 9322444 (+)
LOC117597156 NA other upstream 170030 8695352 ~ 8724440 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other upstream 831631 8056056 ~ 8062839 (+)
LOC113547228 NA other upstream 2190124 6684336 ~ 6704346 (+)
LOC117597080 NA other upstream 2297869 6595126 ~ 6596601 (+)
trnat-ugu_2 NA other upstream 2750668 6143532 ~ 6143802 (+)
rbm14b rbm14b,LOC108267504,LOC108440267,LOC107567604,LOC107728024 other downstream 861731 9758460 ~ 9774049 (+)
gal3st3 gal3st3 other downstream 910592 9807321 ~ 9832280 (+)
si:ch211-168d1.3 LOC108267908,LOC108440265 other downstream 964165 9860894 ~ 9882713 (+)
G61786 LOC108267738,LOC108267931,LOC108267740,LOC108267937,LOC108267932,LOC108267739,LOC108267929,LOC108267241 other downstream 1271117 10167846 ~ 10266279 (+)
trnak-cuu_13 NA other downstream 1578039 10474768 ~ 10486042 (+)

Expression


Co-expression Network