G61518


Basic Information

Item Value
gene id G61518
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9312797 ~ 9313019 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU72863
gtagactttcagctttatttgaagaggttccacaaaaatatggcatttaccatttaggaattacagccattttaagcaatgtacttccattttcaggggctcagaggtatttggacaaagtgacataattgtaaatataaccataattttaatacttggatgaaaatcctttgcagtcaatgactgcctgaagtctggagcccatggacatcaccaagtttcc

Function

GO:

id name namespace
GO:0015103 inorganic anion transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72863 True 223 lncRNA 0.37 1 9312797 9313019

Neighbor

gene id symbol gene type direction distance location
LOC113524717 LOC107663573 coding downstream 387860 8917374 ~ 8924937 (-)
LOC113526862 LOC108267289 coding downstream 744809 8564114 ~ 8567988 (-)
LOC117596993 NA coding downstream 751765 8544276 ~ 8561032 (-)
LOC113526472 NA coding downstream 861799 8447383 ~ 8450998 (-)
efcab14 efcab14 coding downstream 1193911 8106893 ~ 8118886 (-)
LOC117597149 NA coding upstream 55703 9368722 ~ 9377012 (-)
LOC113540032 NA coding upstream 70966 9383985 ~ 9389481 (-)
kcnj10a kcnj10,LOC108440277,LOC107728032,LOC107703868,LOC100697257,LOC102205965 coding upstream 77984 9391003 ~ 9412913 (-)
dusp19b dus19 coding upstream 122115 9435134 ~ 9437967 (-)
capn1 capn1,LOC108267277,LOC108440273,LOC107728026,LOC106608991 coding upstream 126331 9439350 ~ 9571464 (-)
G61482 NA non-coding downstream 76873 9021310 ~ 9235924 (-)
G61496 NA non-coding downstream 153682 9151418 ~ 9159115 (-)
G61492 LOC108267340 non-coding downstream 187489 9120761 ~ 9125308 (-)
LOC117597152 NA non-coding downstream 202832 9107528 ~ 9109965 (-)
G61489 NA non-coding downstream 215923 9088707 ~ 9096874 (-)
G61876 NA non-coding upstream 115775 9428794 ~ 9430832 (-)
G61881 NA non-coding upstream 135496 9448515 ~ 9454706 (-)
LOC117597234 NA non-coding upstream 186700 9499719 ~ 9499931 (-)
LOC117597233 NA non-coding upstream 190043 9503062 ~ 9503274 (-)
LOC117597212 NA non-coding upstream 193425 9506444 ~ 9506654 (-)
G61478 NA other downstream 328344 8983234 ~ 8984453 (-)
LOC113526753 LOC108267287,LOC108261139 other downstream 717172 8571496 ~ 8595625 (-)
LOC113526822 LOC108268278 other downstream 760942 8452610 ~ 8551855 (-)
LOC117597002 LOC107721237 other downstream 2413570 6881382 ~ 6899227 (-)
G60166 phlpp1,LOC105899321,LOC101073770,LOC106925929,LOC103142993,LOC103135813 other downstream 3353252 5900249 ~ 5959545 (-)
LOC113540087 LOC108267275 other upstream 1830 9314849 ~ 9327431 (-)
G61537 NA other upstream 24807 9337826 ~ 9338745 (-)
G61900 NA other upstream 292708 9605727 ~ 10041766 (-)
G61972 actn3,LOC106577856,LOC106608893 other upstream 463259 9776278 ~ 9805318 (-)
cxcl19 LOC108267987 other upstream 757387 10070406 ~ 10073229 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G83471 NA non-coding NC_056709.1 CM032078.1 21147149 ~ 21148025 (+)