G61536


Basic Information

Item Value
gene id G61536
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9337876 ~ 9338742 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU72883
cgggccctgagacaagaacccaggttctctccacacagctaaggcacggcggcatcgtcgcgtgaccttgatcatgcggagcgggtttcctctgtttcggaaaaaccccctggtcttgagccaccactgtaggggtctcatgtgcagcaggccaaacggtatcacgttggacgcagctgccaataggcccagcagtctctgaaactgctttacagtgagtgaccggcctactttcactctcgcgaccgctgtgaggaccgactcgatccgagcaggagacaaacgtgcctgcatcgtggtcgaatcccccacacacgcctagataagcggttctctgagctggagaaagcacgcttttctcggcgtttagtcttaaccccagttccttcatatgggcgagaacggcatctcgatgccgagccgccatctgctctgaatgagctaaaatcaaccagtcgtcgatatagttcagtatgcggatgccctgtagtcgcataggagccagggcagcatccacgcacttcgtgaaggtgcggggtgagagtgctaggccgaagggaagaacccgatactggtaagcttcgcccccgaaagcgaacctcaggaacttcctgtgcgggggaaggatggagatgtggaaatacgcatcttttaggtcgatcgtgacgaaccagtcctcggacctgatctgagacacgacctgagtgaccgtaagcatcctgaacttcagtcgagcgactgagaggttcaattgccgcaagtccaaaatgggacgcagccctccccccttcttgggaacaatgaagtaccggctgtagaaccctgactccctgtcgtgaggagggaccacctcgatggcctccttcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72883 True 867 lncRNA 0.56 1 9337876 9338742

Neighbor

gene id symbol gene type direction distance location
LOC113540089 NA coding upstream 5094 9329335 ~ 9332782 (+)
LOC117597148 LOC107663573 coding upstream 346424 8987729 ~ 8991452 (+)
LOC117597150 LOC107663573 coding upstream 501305 8834823 ~ 8836571 (+)
si:cabz01074946.1 NA coding upstream 796585 8530188 ~ 8541291 (+)
vangl2 vangl2,LOC108268029,LOC107686095,LOC107707319,LOC106609014 coding upstream 813588 8509133 ~ 8524288 (+)
pnp5a LOC108267282,LOC103368940,LOC107692836,LOC108440276,LOC107747996,LOC107728028 coding downstream 89983 9428725 ~ 9434604 (+)
sf3b2 sf3b2,LOC107692835 coding downstream 289006 9627748 ~ 9641910 (+)
LOC113539871 LOC108440271 coding downstream 310562 9649304 ~ 9707936 (+)
LOC113540385 klc2,LOC102775952,LOC107728029 coding downstream 373841 9712583 ~ 9723961 (+)
LOC113539763 LOC108267503,LOC108440269 coding downstream 385987 9724729 ~ 9746048 (+)
G61534 NA non-coding upstream 2626 9334739 ~ 9335250 (+)
LOC113540718 NA non-coding upstream 4327 9333343 ~ 9333549 (+)
G61520 NA non-coding upstream 15432 9320161 ~ 9322444 (+)
G61519 LOC108267275 non-coding upstream 20742 9314859 ~ 9317134 (+)
LOC117597154 NA non-coding upstream 168397 9167556 ~ 9169479 (+)
LOC117597225 NA non-coding downstream 3017 9341759 ~ 9341972 (+)
LOC117597235 NA non-coding downstream 4160 9342902 ~ 9343114 (+)
LOC113540712 NA non-coding downstream 10760 9349502 ~ 9349714 (+)
G61600 NA non-coding downstream 110301 9449043 ~ 9456160 (+)
G61638 NA non-coding downstream 239622 9578364 ~ 9592743 (+)
G61359 LOC108267272,LOC108267273 other upstream 441147 8894470 ~ 8896729 (+)
LOC117597156 NA other upstream 613436 8695352 ~ 8724440 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other upstream 1275037 8056056 ~ 8062839 (+)
LOC113547228 NA other upstream 2633530 6684336 ~ 6704346 (+)
LOC117597080 NA other upstream 2741275 6595126 ~ 6596601 (+)
rbm14b rbm14b,LOC108267504,LOC108440267,LOC107567604,LOC107728024 other downstream 419718 9758460 ~ 9774049 (+)
gal3st3 gal3st3 other downstream 468579 9807321 ~ 9832280 (+)
si:ch211-168d1.3 LOC108267908,LOC108440265 other downstream 522152 9860894 ~ 9882713 (+)
G61786 LOC108267738,LOC108267931,LOC108267740,LOC108267937,LOC108267932,LOC108267739,LOC108267929,LOC108267241 other downstream 829104 10167846 ~ 10266279 (+)
trnak-cuu_13 NA other downstream 1136026 10474768 ~ 10486042 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location