G61600


Basic Information

Item Value
gene id G61600
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9449043 ~ 9456160 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU72958
catgacagaaatcATTGACTACTGAGTTCTGAGATTTGTTACAAGTCACTGAAAATAGGAACTACTCATCAGGTCAGCAACAGGAAAGATGTAATGACAATCCAATACTTGTTATGTGTATTGGACTGATTggactttaaatttaaattatttaggtCCAGAGCAAGTAGCAGCTAAATGATATATCACTATGCATTCTGCCGCTGGTTAGCGTACATGCAGTGACTACAGCTTTAAAGTGACAATTTGACCGAATATGAAGTTAATCTGAATTGTAGTTggtcagccaagacatgttagTTATGCTTTGTAACGGAACTAAAGGGCCACTCCTTCTAACAGGTAATGGAATCATATATCTGGCACTTCAGGTTATAAAACAGCAGAACATGtctgcataaaaaaaatataaaactgtaactATTTAATTGAAAATACTTCTAATGTACAGTTCAATTTTTGAACTCTTTTTAGCTCTGCAACACACTTCTTTCAAGTTTCAGCAGTGTGTTTGAAACAGGAAGCAAGTCAATGCCAAACTGCAAATGTAAACACCAAGCATGTCACTTCTCGCTGATTACATATGGGTTCATGGGGAAATTGCGCACGTTTGTGATCTAATCTTGAACAAGACATAAGCTAACTGCCCATGCACTACTAAAGATGTGAAGTATTCCGATAAACCAGTCGTGCTTTTTTCAAAATTACGTGTGTCTGACTTGAGATTAAAgataaaatcactgagatctGCAGTGTGCTGCTCCTCCAGGACCTAAGTTGTCACTGctgttctgaaatatttaaaaaatatttatgggTGGATATGCGTgcgagtgtgtgatgctgacatCTATGGAGCAGCCCAGCAGTGATCCTCTCTCCACAGCCCTCCTTATGATGTTGAAAAGATCAGCAGGAGGTTTATTCAGCTCGTACATCTCCGTCACGCCACCCGTGAAGTCCTCAAAGCCTTCTGATGTACTGCCGCCTGACAGAGCCTCGTAGCAGCTGTtcagcctgacacacacacacacacacacacacataaatgatAGCTTAGTCACTATTAGGGCCacagacaaaatacaaaacttagcatgacaaatattaacaatatgcactgtcacaaagcagttttacagagaTCTGAATGTAGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72958 True 1158 lncRNA 0.39 2 9449043 9456160

Neighbor

gene id symbol gene type direction distance location
pnp5a LOC108267282,LOC103368940,LOC107692836,LOC108440276,LOC107747996,LOC107728028 coding upstream 14439 9428725 ~ 9434604 (+)
LOC113540089 NA coding upstream 116261 9329335 ~ 9332782 (+)
LOC117597148 LOC107663573 coding upstream 457591 8987729 ~ 8991452 (+)
LOC117597150 LOC107663573 coding upstream 612472 8834823 ~ 8836571 (+)
si:cabz01074946.1 NA coding upstream 907752 8530188 ~ 8541291 (+)
sf3b2 sf3b2,LOC107692835 coding downstream 171588 9627748 ~ 9641910 (+)
LOC113539871 LOC108440271 coding downstream 193144 9649304 ~ 9707936 (+)
LOC113540385 klc2,LOC102775952,LOC107728029 coding downstream 256423 9712583 ~ 9723961 (+)
LOC113539763 LOC108267503,LOC108440269 coding downstream 268569 9724729 ~ 9746048 (+)
LOC113540688 ccs coding downstream 292288 9748448 ~ 9757655 (+)
LOC113540712 NA non-coding upstream 99329 9349502 ~ 9349714 (+)
LOC117597235 NA non-coding upstream 105929 9342902 ~ 9343114 (+)
LOC117597225 NA non-coding upstream 107071 9341759 ~ 9341972 (+)
G61536 NA non-coding upstream 110301 9337876 ~ 9338742 (+)
G61534 NA non-coding upstream 113793 9334739 ~ 9335250 (+)
G61638 NA non-coding downstream 122204 9578364 ~ 9592743 (+)
G61689 NA non-coding downstream 424908 9881068 ~ 9968900 (+)
G61696 pfdn2,LOC103133045,LOC103145934,LOC107745204 non-coding downstream 458075 9914235 ~ 9918783 (+)
LOC113540370 NA non-coding downstream 568425 10024585 ~ 10096068 (+)
G61735 NA non-coding downstream 590432 10046592 ~ 10047551 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other upstream 78558 8724545 ~ 9370485 (+)
G61359 LOC108267272,LOC108267273 other upstream 552314 8894470 ~ 8896729 (+)
LOC117597156 NA other upstream 724603 8695352 ~ 8724440 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other upstream 1386204 8056056 ~ 8062839 (+)
LOC113547228 NA other upstream 2744697 6684336 ~ 6704346 (+)
rbm14b rbm14b,LOC108267504,LOC108440267,LOC107567604,LOC107728024 other downstream 302300 9758460 ~ 9774049 (+)
gal3st3 gal3st3 other downstream 351161 9807321 ~ 9832280 (+)
si:ch211-168d1.3 LOC108267908,LOC108440265 other downstream 404734 9860894 ~ 9882713 (+)
G61786 LOC108267738,LOC108267931,LOC108267740,LOC108267937,LOC108267932,LOC108267739,LOC108267929,LOC108267241 other downstream 711686 10167846 ~ 10266279 (+)
trnak-cuu_13 NA other downstream 1018608 10474768 ~ 10486042 (+)

Expression


Co-expression Network