G61638


Basic Information

Item Value
gene id G61638
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9578364 ~ 9592743 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU73000
AAGCACATGAAAGAATCATTAGCCAAAACCTGATTCATGTTCAGAAGAATGCATCAAGACTCATCATTGCGATTAGAGAGACACAACACtttcaaatcacatttcctAGTTAgacactatagaaatgatcccTGAAAGTACAGTCTTAACCTCACACTTCCTCAGACAGTCGAGCACTACAAATATCACACAGATCCTGAAGATGGTAGATTTTAGATTCTACTTTAATACATAAACACTAcgcttaagtattattttgtaaGATTTACTTAGGTCGAGTCTTACTGAAAGTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73000 True 295 lncRNA 0.35 2 9578364 9592743

Neighbor

gene id symbol gene type direction distance location
pnp5a LOC108267282,LOC103368940,LOC107692836,LOC108440276,LOC107747996,LOC107728028 coding upstream 143760 9428725 ~ 9434604 (+)
LOC113540089 NA coding upstream 245582 9329335 ~ 9332782 (+)
LOC117597148 LOC107663573 coding upstream 586912 8987729 ~ 8991452 (+)
LOC117597150 LOC107663573 coding upstream 741793 8834823 ~ 8836571 (+)
si:cabz01074946.1 NA coding upstream 1037073 8530188 ~ 8541291 (+)
sf3b2 sf3b2,LOC107692835 coding downstream 35005 9627748 ~ 9641910 (+)
LOC113539871 LOC108440271 coding downstream 56561 9649304 ~ 9707936 (+)
LOC113540385 klc2,LOC102775952,LOC107728029 coding downstream 119840 9712583 ~ 9723961 (+)
LOC113539763 LOC108267503,LOC108440269 coding downstream 131986 9724729 ~ 9746048 (+)
LOC113540688 ccs coding downstream 155705 9748448 ~ 9757655 (+)
G61600 NA non-coding upstream 122204 9449043 ~ 9456160 (+)
LOC113540712 NA non-coding upstream 228650 9349502 ~ 9349714 (+)
LOC117597235 NA non-coding upstream 235250 9342902 ~ 9343114 (+)
LOC117597225 NA non-coding upstream 236392 9341759 ~ 9341972 (+)
G61536 NA non-coding upstream 239622 9337876 ~ 9338742 (+)
G61689 NA non-coding downstream 288325 9881068 ~ 9968900 (+)
G61696 pfdn2,LOC103133045,LOC103145934,LOC107745204 non-coding downstream 321492 9914235 ~ 9918783 (+)
LOC113540370 NA non-coding downstream 431842 10024585 ~ 10096068 (+)
G61735 NA non-coding downstream 453849 10046592 ~ 10047551 (+)
G61785 LOC108267738,LOC108267740,LOC108267935,LOC108267929 non-coding downstream 572786 10165529 ~ 10297564 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other upstream 207879 8724545 ~ 9370485 (+)
G61359 LOC108267272,LOC108267273 other upstream 681635 8894470 ~ 8896729 (+)
LOC117597156 NA other upstream 853924 8695352 ~ 8724440 (+)
LOC113526345 LOC108268111,LOC103023736,LOC105899422,LOC108436874,LOC101065160 other upstream 1515525 8056056 ~ 8062839 (+)
LOC113547228 NA other upstream 2874018 6684336 ~ 6704346 (+)
rbm14b rbm14b,LOC108267504,LOC108440267,LOC107567604,LOC107728024 other downstream 165717 9758460 ~ 9774049 (+)
gal3st3 gal3st3 other downstream 214578 9807321 ~ 9832280 (+)
si:ch211-168d1.3 LOC108267908,LOC108440265 other downstream 268151 9860894 ~ 9882713 (+)
G61786 LOC108267738,LOC108267931,LOC108267740,LOC108267937,LOC108267932,LOC108267739,LOC108267929,LOC108267241 other downstream 575103 10167846 ~ 10266279 (+)
trnak-cuu_13 NA other downstream 882025 10474768 ~ 10486042 (+)

Expression


Co-expression Network