G61735


Basic Information

Item Value
gene id G61735
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10046592 ~ 10047551 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU73125
ttctgttaatCTCTGCCTGCTGCATATTGTAAGACAACATAAGTGATGGAAAGAAACTGCTGAGTCACATAGTTGTATAGCGCGCCATCTAGTGGCCATGAATAGGAATGGTTTCTGTCCAGCTTTCCAGACATTACAGTAATTTGCTAACTGGCtacctataaataaatatggctATAAAGATTCAGTGcaagaaaccaaaaaacaacATACTGATATGGAAAATGCATTTACCATGAAATCATTATGAAtagctgaaaaaaatggaaagattaGTGTGTTTTAGATAAATACTATAAATTAAACAATCATTAAAATAGATTATATCCTGGGGAAAAGCTGCAGTTCTAAGAGCAAACTAATAGCATCTGAATTGAGTAATTGTCTAAGTTTATTCCATCATTTatgataattaaaatgattgtttaaGACAGAAATTCAAAAACCGAAGGATGTCATGCTTAGTGACAACAGGGTTCACAGAAGAACAGCAGTCACAACTGTGTTAATATCTTAATCTGGTCAGTGCTTTTACACTTGGTTAGTGCTGACCAGATCAGTGCAGAATCACTTCTCAATTCTCTCTCGAAGGCCTGtgagatttctgtttaaattGGCATCCTGAGGTTGTTGTGCTGGTATACGTGTTATTGGTCATAATGGTAAATCCAACTCTACTTCAGAAGACACGATGTATCCCTTTCCTGTGGGAACTCCAGCACTGAGGGCTTTGCTCCAGCTTCCAGTGTCACGATAAGTCAGCAGGATTTCAAATactataaaacacaacaaattctTACCAGTGAAAAGACATTCAAAACTCATATTAGATAGTTACACTTGTTACACAGCTATAACTCTAATGGCATCATACCTCTCTCTTCAGTTCTCACAGCTGATCCATTTTTAGATTGAGTTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73125 True 921 lncRNA 0.36 2 10046592 10047551

Neighbor

gene id symbol gene type direction distance location
ino80b ino80b coding upstream 49544 9992956 ~ 9997048 (+)
clcn3 clcn3,LOC107692822,LOC107696737 coding upstream 79760 9927321 ~ 9966832 (+)
nit1 nit1 coding upstream 120738 9919860 ~ 9925854 (+)
trnas-gcu NA coding upstream 134114 9912397 ~ 9912478 (+)
actn3b actn3,LOC108440266 coding upstream 241251 9776496 ~ 9805341 (+)
LOC117597106 LOC108267738,LOC108267931,LOC108267929,LOC108267937 coding downstream 176231 10223782 ~ 10224603 (+)
LOC113538341 NA coding downstream 189201 10236752 ~ 10266758 (+)
LOC117597107 LOC108267981 coding downstream 223292 10270843 ~ 10280812 (+)
LOC113540310 LOC108267978 coding downstream 315439 10362990 ~ 10370654 (+)
si:ch211-1o7.2 ankrd53 coding downstream 344824 10392375 ~ 10396736 (+)
G61689 NA non-coding upstream 77692 9881068 ~ 9968900 (+)
G61696 pfdn2,LOC103133045,LOC103145934,LOC107745204 non-coding upstream 127809 9914235 ~ 9918783 (+)
G61638 NA non-coding upstream 453849 9578364 ~ 9592743 (+)
G61600 NA non-coding upstream 590432 9449043 ~ 9456160 (+)
LOC113540712 NA non-coding upstream 696878 9349502 ~ 9349714 (+)
G61785 LOC108267738,LOC108267740,LOC108267935,LOC108267929 non-coding downstream 117978 10165529 ~ 10297564 (+)
LOC117596987 NA non-coding downstream 242323 10289874 ~ 10290684 (+)
G61842 NA non-coding downstream 310263 10357814 ~ 10358964 (+)
G62131 NA non-coding downstream 449579 10497130 ~ 10497360 (+)
LOC117596986 NA non-coding downstream 451724 10499275 ~ 10506477 (+)
si:ch211-168d1.3 LOC108267908,LOC108440265 other upstream 163879 9860894 ~ 9882713 (+)
gal3st3 gal3st3 other upstream 214312 9807321 ~ 9832280 (+)
rbm14b rbm14b,LOC108267504,LOC108440267,LOC107567604,LOC107728024 other upstream 272543 9758460 ~ 9774049 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other upstream 676107 8724545 ~ 9370485 (+)
G61786 LOC108267738,LOC108267931,LOC108267740,LOC108267937,LOC108267932,LOC108267739,LOC108267929,LOC108267241 other downstream 120295 10167846 ~ 10266279 (+)
trnak-cuu_13 NA other downstream 427217 10474768 ~ 10486042 (+)
trnak-cuu_14 NA other downstream 439351 10486902 ~ 10486974 (+)
trnak-cuu_15 NA other downstream 440589 10488140 ~ 10488212 (+)
trnak-cuu_16 NA other downstream 441814 10489365 ~ 10489436 (+)

Expression


Co-expression Network