G61842


Basic Information

Item Value
gene id G61842
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10357814 ~ 10358964 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU73244
AGTTCTCAGAATGTAGATAAGCACTTTTTGCTTATGTTTTCTCACTTTGTTGTTCCCATAAAAGCAATTAGCAATGCAAACAGAGGTGTCATTAATGTTAAGTTCATCACAGTTGAAGTGTCTTGAAGGTGCTCTACAAAATGTTCAGTGTCTCCTCTTGGCTTCTGCACGAAGGTACAGCTGATTGTGTCTCTTACAGGGACAATAAACGGCTCCTATAGTGATTGACAACTGATCATTTAGGGCATGTGTGTGACATAGTTATATACACTagatggccaaaagtttgtggacacctgaccatcacacccatatggtttttccccaaacacaaagttggaagcacataattatatagaatgtttttgtctgctgtagctttacaattttccttcactggaactaagaggcccgaatctgttccagcatgaaaatgcccctgtgcacaaagtgagctccatgaagacatggttttccaaggttGATATGGAAGAACCTTTGGTGTCCCCACAGCCaaactccaaaatctagtgaaaaacTTTGCGAGAAGTGTGGAGAccttttacacacacacacacacacacacagcgtcagAAGTAAGTCTTGTGGATCCCTGAgaaagacccttaaccctcgatTGCTTAGCTTAGTTGTAAGGTTGACATAAAATGTAGTATTACTGATCATCTCTACGCTCAGGTTCCTGTGGCCACGATGGTTCAGTTCAACTGGTTTCTCTGTCTCAAGTTAAGTACTCTGTGGGCACCGATTAGATCTTaagaaatatattaattcatgGTGTGGccttaatatattaattcatgGTGACACCTTATTAAAAATTAACTACCATGTCACTTCAGCGGCTCTGTACAAATCACTAATTTGGCCAGCTTCATTAGGTAATGGATTCCAGGATACTGAATGGTCTGGAATACTTTAAAGATGATTAAAGTCTTTATTAAACAGAGTGCAATAACGGTGAAGAAGGACTCTGTTTCTCAATACCTCTGccaaaaacagattaaaaacattgtgatatatactttttatacatatttcatacatattcatattctgaCCACTcacaaaaaatgtcagtggaaaTGTTTGAACTATTCATCAATGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73244 True 1131 lncRNA 0.39 2 10357814 10358964

Neighbor

gene id symbol gene type direction distance location
LOC117597107 LOC108267981 coding upstream 77002 10270843 ~ 10280812 (+)
LOC113538341 NA coding upstream 91056 10236752 ~ 10266758 (+)
LOC117597106 LOC108267738,LOC108267931,LOC108267929,LOC108267937 coding upstream 133211 10223782 ~ 10224603 (+)
ino80b ino80b coding upstream 360766 9992956 ~ 9997048 (+)
clcn3 clcn3,LOC107692822,LOC107696737 coding upstream 390982 9927321 ~ 9966832 (+)
LOC113540310 LOC108267978 coding downstream 4026 10362990 ~ 10370654 (+)
si:ch211-1o7.2 ankrd53 coding downstream 33411 10392375 ~ 10396736 (+)
trnak-cuu_4 NA coding downstream 115654 10474618 ~ 10474690 (+)
trnak-cuu_5 NA coding downstream 116893 10475857 ~ 10475929 (+)
trnak-cuu_6 NA coding downstream 118125 10477089 ~ 10477162 (+)
G61785 LOC108267738,LOC108267740,LOC108267935,LOC108267929 non-coding upstream 60250 10165529 ~ 10297564 (+)
LOC117596987 NA non-coding upstream 67130 10289874 ~ 10290684 (+)
LOC113540370 NA non-coding upstream 261746 10024585 ~ 10096068 (+)
G61735 NA non-coding upstream 310263 10046592 ~ 10047551 (+)
G61689 NA non-coding upstream 388914 9881068 ~ 9968900 (+)
G62131 NA non-coding downstream 138166 10497130 ~ 10497360 (+)
LOC117596986 NA non-coding downstream 140311 10499275 ~ 10506477 (+)
trnan-guu_13 NA non-coding downstream 172007 10530971 ~ 10531044 (+)
trnak-cuu_20 NA non-coding downstream 172492 10531456 ~ 10531528 (+)
LOC117596985 NA non-coding downstream 456786 10815750 ~ 10816552 (+)
G61786 LOC108267738,LOC108267931,LOC108267740,LOC108267937,LOC108267932,LOC108267739,LOC108267929,LOC108267241 other upstream 91535 10167846 ~ 10266279 (+)
si:ch211-168d1.3 LOC108267908,LOC108440265 other upstream 475101 9860894 ~ 9882713 (+)
gal3st3 gal3st3 other upstream 525534 9807321 ~ 9832280 (+)
rbm14b rbm14b,LOC108267504,LOC108440267,LOC107567604,LOC107728024 other upstream 583765 9758460 ~ 9774049 (+)
G61359 LOC108267272,LOC108267273 other upstream 1461085 8894470 ~ 8896729 (+)
trnak-cuu_13 NA other downstream 115804 10474768 ~ 10486042 (+)
trnak-cuu_14 NA other downstream 127938 10486902 ~ 10486974 (+)
trnak-cuu_15 NA other downstream 129176 10488140 ~ 10488212 (+)
trnak-cuu_16 NA other downstream 130401 10489365 ~ 10489436 (+)
trnak-cuu_17 NA other downstream 131614 10490578 ~ 10490650 (+)

Expression


Co-expression Network