trnak-cuu_13


Basic Information

Item Value
gene id trnak-cuu_13
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10474768 ~ 10486042 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU73272
CTCTGCTCGGTCGGCTTGCGCTCAATCTCAGGTCCCTGGGTTTGAGCCCCGTgctgggtggtggtggtgttggctGGTGCCCTGAGACTGCGTGAGTTCGGAACGGTCTTGGTAGGCGCCCTTCCAGCTGGCAGCAACAGCCGTGTGGTCCTCAGTCCAGCGCCCCGCTTTTGCGAGGCGCCCACGGTCGCGTTGGCTCGAACCCCACGATGGGCAGGGAGTTTTTGTTCGAGGTCGTCTCCGGGGGCGCCTTTCCGAGGCGCATCGCCCATCGGGCTGCGGTTCGGCTGGGCTGCTGGCCTCCCTGTTGCGCGTGAGGCGCTTAATCACGGGGTCCTGGGTTCGAGCCAGCCCCATGAAGGGTCAGGAGCGTTATTGCGGGGGGCTCCTTGAGACGGCAAGAGTTCAATGTCGTCCAGCCCCATGGAGAGGGGAGGCGCGTTTTCGCGGGAACCCTCAGCTGCTCGTTCCTCTTTTTGCCTTCTGATTGCCTTCTTCTGACAATTTCAATATGATTCCACAGTTTTGCTTTCAAATCTGCTTCAACTCTCCAATCTCGACACACGAGCTCGGCTGCCAGATTAATTAGGGAGTGATTACTGGGGTTGTTGCGTCAGCTGGTCCGGCGCTTAATCACATGGTCCGGGGTTCGAGACAGCCCCGTGCAGGGGGAGGAGCGTTTTTGGGGGGGCGCCCTGAGAGTGTGCGCTGGTTCAAAAGGCTCTTGCCAAGACGCACCGCCCTTGCAGCAACAGCCGCTCGCTCCTCTGTTGGCCTCCTCGTTCCTCCGTTTGCCTTCCGCTCAAGCTCGTCAGGGGCGTGGTGGTTCTGGATGTCTAACAAAGGCTGCCGCTGCGTCCCTGGGTGGGCTCGAACCACCAACCTTTCGGTTAACAGCCGAACGCGCTAGCCTATTGCGCCCGTGCCGGGCTTGCTGGCTTTCCCGCTCGCCGCTCGGAAAAACCGTGCGTGCCCTGTTGGGCCGAAAACCAGCCGCGGGGTGCCGGGACATGTTTTGTGCCAGGCCCCTGTGCCAGTGCTTTCTTCAGAGAGGGCGTGGGCAGGCAGCCGACGTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCGCGGAGTGTTTTTTGCGGGGGCGCCCCGAGACGGCAAGAGTTCAACGTTGTCCCTGGAGGCCCCCGCCGATTCCGCCCCTGCTCGGTCGGCTTGCGCTCAATCTCAGGTCCCTGGGTTTGAGCCCCGTgctgggtggtggtggtgttggctGGTGCCCTGAGACTGCGTGAGTTCGGAACGGTCTTGGTAGGCGCCCTTCCAGCTGGCAGCAACAGCCGTGTGGTCCTCAGTCCAGCGTCCCGTTTTTGCGAGACGTCCACGGTCGTTGGCTCGAACCCCACGATGGGCAGGGAGTTTT
>trnak-cuu_13
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73272 True 1446 lncRNA 0.62 2 10474768 10486042
trnak-cuu_13 False 73 tRNA 0.62 1 10485672 10485744

Neighbor

gene id symbol gene type direction distance location
trnak-cuu_4 NA coding upstream 78 10474618 ~ 10474690 (+)
si:ch211-1o7.2 ankrd53 coding upstream 78032 10392375 ~ 10396736 (+)
LOC113540310 LOC108267978 coding upstream 104114 10362990 ~ 10370654 (+)
LOC117597107 LOC108267981 coding upstream 193956 10270843 ~ 10280812 (+)
LOC113538341 NA coding upstream 208010 10236752 ~ 10266758 (+)
rgp1 rgp1,LOC107741481,LOC107668635,LOC107588171,LOC107691996 coding downstream 76190 10562232 ~ 10569484 (+)
trnak-cuu_21 NA coding downstream 79611 10565653 ~ 10565724 (+)
pik3c3 pik3c3,LOC107691920,LOC107562280 coding downstream 88881 10574923 ~ 10595122 (+)
faah2b LOC108267965 coding downstream 149663 10635705 ~ 10644751 (+)
nat8l nat8l,LOC107691926,LOC107741469,LOC107562319,LOC107753918,LOC107588165 coding downstream 193215 10679257 ~ 10689652 (+)
G61842 NA non-coding upstream 115804 10357814 ~ 10358964 (+)
G61785 LOC108267738,LOC108267740,LOC108267935,LOC108267929 non-coding upstream 177204 10165529 ~ 10297564 (+)
LOC117596987 NA non-coding upstream 184084 10289874 ~ 10290684 (+)
LOC113540370 NA non-coding upstream 378700 10024585 ~ 10096068 (+)
G61735 NA non-coding upstream 427217 10046592 ~ 10047551 (+)
G62131 NA non-coding downstream 11088 10497130 ~ 10497360 (+)
LOC117596986 NA non-coding downstream 13233 10499275 ~ 10506477 (+)
trnan-guu_13 NA non-coding downstream 44929 10530971 ~ 10531044 (+)
trnak-cuu_20 NA non-coding downstream 45414 10531456 ~ 10531528 (+)
LOC117596985 NA non-coding downstream 329708 10815750 ~ 10816552 (+)
G61786 LOC108267738,LOC108267931,LOC108267740,LOC108267937,LOC108267932,LOC108267739,LOC108267929,LOC108267241 other upstream 208489 10167846 ~ 10266279 (+)
si:ch211-168d1.3 LOC108267908,LOC108440265 other upstream 592055 9860894 ~ 9882713 (+)
gal3st3 gal3st3 other upstream 642488 9807321 ~ 9832280 (+)
rbm14b rbm14b,LOC108267504,LOC108440267,LOC107567604,LOC107728024 other upstream 700719 9758460 ~ 9774049 (+)
LOC113539869 LOC108267273,LOC108267272,LOC108267212,LOC108267213,LOC108267290,LOC108261494,LOC108267722 other upstream 1104283 8724545 ~ 9370485 (+)
trnak-cuu_14 NA other downstream 860 10486902 ~ 10486974 (+)
trnak-cuu_15 NA other downstream 2098 10488140 ~ 10488212 (+)
trnak-cuu_16 NA other downstream 3323 10489365 ~ 10489436 (+)
trnak-cuu_17 NA other downstream 4536 10490578 ~ 10490650 (+)
trnak-cuu_18 NA other downstream 5755 10491797 ~ 10491869 (+)

Expression


Co-expression Network