LOC113540717


Basic Information

Item Value
gene id LOC113540717
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9595666 ~ 9596110 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU73331
CTTTCTgggatcatttctatagtgtcTAACTAGGAAATGTGATTTGAAGGTGTTATGTCTCCCTAATCACAATGATGAGTTTTGATGTGTTCTTCTGAACATGAATCAGATTGAAGCTGTTGTTTCTTTAATGAGCTTTAATCCTTGATGAATATTCATCACTTTTTGAAAAGTGTGAGAGAAAAGCAGTGCATGATCAGAGTGATTTTAAATAAGCTGTTAACAATAGAACAGCTCTGTCTATAGTcttatgatgtgtttaaaactggtaatgtttttatttggggTATTGCAAGCAGTAAGCACCCTATTGATTTTTAGTGTAATGTGTTAACCAGCTACaagaaacattaaataaaaatgtgtgattgTGATCATATATGCAAATGAATGCATCTTGAGAAAAATCatgcatacaaaataaaactatttgcCC
>XR_003404091.2
AAGACTATACTTTCTgggatcatttctatagtgtcTAACTAGGAAATGTGATTTGAAGGTGTTATGTCTCCCTAATCACAATGATGAGTTTTGATGTGTTCTTCTGAACATGAATCAGATTGAAGCTGTTGTTTCTTTAATGAGCTTTAATCCTTGATGAATATTCATCACTTTTTGAAAAGTGTGAGAGAAAAGCAGTGCATGATCAGAGTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73331 True 436 lncRNA 0.32 1 9595666 9596101
XR_003404091.2 False 215 lncRNA 0.34 1 9595896 9596110

Neighbor

gene id symbol gene type direction distance location
capn1 capn1,LOC108267277,LOC108440273,LOC107728026,LOC106608991 coding downstream 24202 9439350 ~ 9571464 (-)
LOC113539885 LOC100379168 coding downstream 111065 9474177 ~ 9484601 (-)
dusp19b dus19 coding downstream 157699 9435134 ~ 9437967 (-)
kcnj10a kcnj10,LOC108440277,LOC107728032,LOC107703868,LOC100697257,LOC102205965 coding downstream 182753 9391003 ~ 9412913 (-)
LOC113540032 NA coding downstream 206185 9383985 ~ 9389481 (-)
zgc:101810 zgc:101810,LOC108267909,LOC108440263,LOC103038739,LOC107747924,LOC107692827,LOC107377040,LOC105026763 coding upstream 286601 9882711 ~ 9889757 (-)
six7 LOC108267910,LOC108440264,LOC105902948,LOC107567605,LOC105026762,LOC102308987,LOC101481621,LOC107748082,LOC107553799,LOC105933590,LOC103360578 coding upstream 296241 9892351 ~ 9896258 (-)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107692823,LOC107696735 coding upstream 311449 9907559 ~ 9911772 (-)
pfdn2 pfdn2,LOC107745204 coding upstream 318124 9914234 ~ 9919791 (-)
mfap3l mfap3l coding upstream 376273 9972383 ~ 9980666 (-)
LOC113540705 NA non-coding downstream 1607 9593854 ~ 9594059 (-)
LOC113540727 NA non-coding downstream 2183 9593272 ~ 9593483 (-)
LOC117597211 NA non-coding downstream 3066 9592389 ~ 9592600 (-)
LOC117597226 NA non-coding downstream 4178 9591281 ~ 9591488 (-)
LOC117597238 NA non-coding downstream 5387 9590067 ~ 9590279 (-)
LOC113540728 NA non-coding upstream 1532 9597642 ~ 9597848 (-)
LOC117597232 NA non-coding upstream 2891 9599001 ~ 9599207 (-)
LOC117597231 NA non-coding upstream 7010 9603120 ~ 9603327 (-)
G61899 NA non-coding upstream 8466 9604576 ~ 9613460 (-)
LOC117597242 NA non-coding upstream 8482 9604592 ~ 9604804 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other downstream 66841 8639468 ~ 9528825 (-)
G61537 NA other downstream 256921 9337826 ~ 9338745 (-)
LOC113540087 LOC108267275 other downstream 268235 9314849 ~ 9327431 (-)
G61478 NA other downstream 611213 8983234 ~ 8984453 (-)
LOC113526753 LOC108267287,LOC108261139 other downstream 1000041 8571496 ~ 8595625 (-)
G61900 NA other upstream 9617 9605727 ~ 10041766 (-)
G61972 actn3,LOC106577856,LOC106608893 other upstream 180168 9776278 ~ 9805318 (-)
cxcl19 LOC108267987 other upstream 474296 10070406 ~ 10073229 (-)
LOC113540372 NA other upstream 482578 10078688 ~ 10080237 (-)
trnan-guu_9 NA other upstream 890558 10486668 ~ 10486741 (-)

Expression


Co-expression Network