G61934 (pacs1,LOC108440271,LOC103376102)


Basic Information

Item Value
gene id G61934
gene name pacs1,LOC108440271,LOC103376102
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 9684030 ~ 9723952 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU73387
AAAGTGAgaggttttatttcttttgatcATTTTACATCAGATCGGCCTGTTCACAGGTAACCTCCCCCCTCCCCCAAAAACCACATTAAACCTGCACAAACACGTTCTACAGAGTAGGAAAAGCTGCACACTGCAGATGAGCTGATGTGAGTTTTGTGGTGTGTCTGATAAAGGAAGAAAGACGTTCTCAGCATACGTAGCCATCTTGTACCTGTGACATCAGTAGTTCCCAGCAGACCTTGTGATCCGCCTGCACTGAACAACATGGCTGCACATTCTATCATTTGTTAATAGTCATTACAATATTAACATTTGCGATATGCAAACTAGGGTCTAGGGCTGCACGATTCATACTCACAattttcagattaaatataactGACTGCAGTATATGTGAGCTTAGCTAATTAGTTAATACTAAAGGATTTAATTAGAGACTAATTGTATTTGAGTGAAtctcttaaaataataaatctaacgTGACgaggagtgttttattctgattaactgATGTGTAACAGGAATGTAGGTTAATAATGTACAATGCAAAAAGGCtggtttctgtttatttaaaataaaaagaaataatgaagcTAATTTGTTCCTAGCTTAGTGTAGTGATTTGATATGgagtaaaataattattttatcctTAATCAAAGATCATCGAGGATTAGTGTTTTGATGATAGTGTAGCTGTAACATGATCAGAATATGGTATTAGGTCAATAGCACACAGCCTTGTTGCACAGCTAGTCTTCCTTATACTAACACAGCCAAGACAGCTCGCTAATCAAAGGAAATCATAAATCTCAGGCTCATAATACAATCGACTGTTATGGTGAGTGGGTGGGGTTAaagctttttgcagtgtaaaagCACTCTTGAGCACTACACTAGAGATTACCTATCTGCCTGAGCGATACACAGACAGTTACAAAACAATACAGAATCCATGTGTGGAGATATGACACAGTGAATGAAACGTTTCCACAGCTGACAGTCTGTTTTTATATCACAGCGCAAAGTCTTTCCATTTTCCTTCCTACACTCCTACAACctcacattcatttttaacaccTTCACCTACCAAAAGTCCAAAGTCAATGTCCCTTCTACCTTTCATTACCTATTCTCATTTTCCAGCAACACCATTCTGCACAACCGAAATCAGCCAAACAGATGGATGTgtatttaaaggagcagtttgtaattttattttagtgcCCTCTGCTGGCTCTGAGGTGATGTGAACacacacacacacacacacacacacacacacacacccattcttACCTGGCCTTGCCAGTCGGTGCCATTAACAAGGACGAGGCTCTCGGGTAACGCTGCATCAGACAACAAAATCTGATTCAACTGATCATACACAGCTTTCCTgaggacctgtgtacTGTGTCCTAGTTCAGGTGACCTCTCACTGTCTGAGCTGTTGGTTCGTTCGCTCAGCGGTTTAGAGAGCTGCCGCTCCTTCATTGGAGTGCTGCGTTTCTGCCGGGGTGTGTGTGTCCCAtcca
>TU73388
AAAGTGAgaggttttatttcttttgatcATTTTACATCAGATCGGCCTGTTCACAGGTAACCTCCCCCCTCCCCCAAAAACCACATTAAACCTGCACAAACACGTTCTACAGAGTAGGAAAAGCTGCACACTGCAGATGAGCTGATGTGAGTTTTGTGGTGTGTCTGATAAAGGAAGAAAGACGTTCTCAGCATACGTAGCCATCTTGTACCTGTGACATCAGTAGTTCCCAGCAGACCTTGTGATCCGCCTGCACTGAACAACATGGCTGCACATTCTATCATTTGTTAATAGTCATTACAATATTAACATTTGCGATATGCAAACTAGGGTCTAGGGCTGCACGATTCATACTCACAattttcagattaaatataactGACTGCAGTATATGTGAGCTTAGCTAATTAGTTAATACTAAAGGATTTAATTAGAGACTAATTGTATTTGAGTGAAtctcttaaaataataaatctaacgTGACgaggagtgttttattctgattaactgATGTGTAACAGGAATGTAGGTTAATAATGTACAATGCAAAAAGGCtggtttctgtttatttaaaataaaaagaaataatgaagcTAATTTGTTCCTAGCTTAGTGTAGTGATTTGATATGgagtaaaataattattttatcctTAATCAAAGATCATCGAGGATTAGTGTTTTGATGATAGTGTAGCTGTAACATGATCAGAATATGGTATTAGGTCAATAGCACACAGCCTTGTTGCACAGCTAGTCTTCCTTATACTAACACAGCCAAGACAGCTCGCTAATCAAAGGAAATCATAAATCTCAGGCTCATAATACAATCGACTGTTATGGTGAGTGGGTGGGGTTAaagctttttgcagtgtaaaagCACTCTTGAGCACTACACTAGAGATTACCTATCTGCCTGAGCGATACACAGACAGTTACAAAACAATACAGAATCCATGTGTGGAGATATGACACAGTGAATGAAACGTTTCCACAGCTGACAGTCTGTTTTTATATCACAGCGCAAAGTCTTTCCATTTTCCTTCCTACACTCCTACAACctcacattcatttttaacaccTTCACCTACCAAAAGTCCAAAGTCAATGTCCCTTCTACCTTTCATTACCTATTCTCATTTTCCAGCAACACCATTCTGCACAACCGAAATCAGCCAAACAGATGGATGTgtatttaaaggagcagtttgtaattttattttagtgcCCTCTGCTGGCTCTGAGGTGATGTGAACacccaagacacacacacacaaaaaaaaccaccacaCAGCTAATTATGTTACAAAGAAATCGGAATGcgattcctctgtcctgaagactgtcccattgaggaaaacctactgacaatggagactccttccaaaaatgttaaagaaacgtctcctcacagtaAGCTACACCATATCGATGATtacatgttgttctttgttaaacgtgttttaatccatttattactaGCCTTAGACTATGCAGATTGTCTGctatacatgtccctgtgaacaagctgttactacagaaacgataatttattagaacaagtgcattaatatgatcctgtataacatcATGTACACCATCTGTGTCCTCGTAGGGGGCGGGGCAAAGTTTAGCTGAGGGCTGAGccaatttcagggccagaaaaatgtaaataaaagtcTGCTATAGACATTTGCGTTGCATCGCAGATATCtttgattttatattaatatagtaGGGAAAGAAAactacaaactgcacctttaataaaaTTTCCATTTCACCTACTTACTGCAAAACCGTTCAGTCAAATAAATGGCTCAAGTGACACAGCAGGTACAATAATACTGCTGTGTGCCTGACAACCACAACACAAGAATACAGTACATAAGCCCACAGTGGAGGACTTCTTTGTTTTGGCTCATACATACATGTAGAAATAATTGCCATTTAGGAGGATGCTAAATGAACAAGTAAATTAGTGAGCATGGAGATTTGTTCTAATCAGAGTTCACTCATTGTTCGGAGCAAATAAATTCAACCAATCACAAATTCACATTCTCATGATGGTGCTGGATGTTAAACTCTGAACTGCAAATAACTATACATACAATTATATACAAACTCTTGACTTTATCATGTGATTCTGGACAGTAACCAGGACTGagaaattaaagaatgacatcaaaATAATCAGCAAAACACAACTTGGGTCCAGTTTCAGTATTAACTTTGTCTTTCGCAGCATAAAGAGCAACTACAGTGAGAGCTCTTCTGATCACACAGCAGTTTAAACATGCAACAAAGCCCAGTGTTTCTTTAACAGTTCACTACTCTGTAGTAGGATTTGTTCTTCACAGAGATTCACCTACTTCCTTCTATGTAAACAAAACCGTGTGTGGTATTTACAAAGAAGGAAACGACAATTTCAATAAGTTAAACCtgtatatacagaaaaaaaaggcaaaagtgAGGCCATACCTCTACCACAACACTACTTTCTGTTCATTTCAGAGCAGAGACActttacttaaaataaataaataaaaaaaaagttttccatcCTAACATTTTGTTCATCTATAACAAAACACTCGAGATCGTACCACTCGATCAACTGTGATTTTTGGGTGTGTGGAGCCACATTTGCAGCCTCCATGCTTCTAGTCAAGTACATAACATTTTGATCACAGGTAATTAAAGTTAATGCTTGCAGTTACACACATTATGATTCCTTGTATGGTGTATAACTTTTTTAAACCATGCCATGTCTCTGAGATGCGATTAAGTGCCTTGAATGCAGACACACATCCAGTGTAGTAAGCAGCATGCTGTATTGCATTAACcgtgtggttttattttcaggAGAACAGGCTGGCCGTGGACTGAAAGAATTGAGCGCAGTGCAATGCCAGTCTGCATTGCGCATTGAACTGTAACTCTATCTACCTGTCGTGTGTTAATAATCTGATCAGTGCAGTTTAATAAAGCAAAGCAGACACAGCTATTTGGTAGCACACCAGCTGTCAAATTAAAGACTAATAAAAatgttggaaaataaaaattacataatgCTGTTCTGATTTGAATGCACAAGGCAAACAGCCTGTCTGCTTTGCTCCGCCCTCTTTAATACCCCAACCACACTCTCTAACCAATCAGGGAGCTTCGTCTTGAAAGGTCCACGTTGCTGGTGCTCAGTCCTCTACATTCTGATAGGCCGCTGTTTACATCCTGAAAACAAAGAATATATGTTTGTGAAACACTGAAgaattgcgtgtgtgtgagtgtgtgcgcgtgtgtg

Function

symbol description
pacs1 Enables transmembrane transporter binding activity. Involved in protein localization to plasma membrane. Predicted to be located in cytosol. Implicated in Schuurs-Hoeijmakers Syndrome.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73387 False 1535 lncRNA 0.41 3 9694664 9723952
TU73388 True 3303 lncRNA 0.38 3 9684030 9723952

Neighbor

gene id symbol gene type direction distance location
capn1 capn1,LOC108267277,LOC108440273,LOC107728026,LOC106608991 coding downstream 112566 9439350 ~ 9571464 (-)
LOC113539885 LOC100379168 coding downstream 199429 9474177 ~ 9484601 (-)
dusp19b dus19 coding downstream 246063 9435134 ~ 9437967 (-)
kcnj10a kcnj10,LOC108440277,LOC107728032,LOC107703868,LOC100697257,LOC102205965 coding downstream 271117 9391003 ~ 9412913 (-)
LOC113540032 NA coding downstream 294549 9383985 ~ 9389481 (-)
zgc:101810 zgc:101810,LOC108267909,LOC108440263,LOC103038739,LOC107747924,LOC107692827,LOC107377040,LOC105026763 coding upstream 158759 9882711 ~ 9889757 (-)
six7 LOC108267910,LOC108440264,LOC105902948,LOC107567605,LOC105026762,LOC102308987,LOC101481621,LOC107748082,LOC107553799,LOC105933590,LOC103360578 coding upstream 168399 9892351 ~ 9896258 (-)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107692823,LOC107696735 coding upstream 183607 9907559 ~ 9911772 (-)
pfdn2 pfdn2,LOC107745204 coding upstream 190282 9914234 ~ 9919791 (-)
mfap3l mfap3l coding upstream 248431 9972383 ~ 9980666 (-)
LOC113540706 NA non-coding downstream 63111 9620713 ~ 9620919 (-)
LOC113540715 NA non-coding downstream 63604 9620215 ~ 9620426 (-)
LOC117597230 NA non-coding downstream 67823 9615995 ~ 9616207 (-)
LOC117597228 NA non-coding downstream 69970 9613854 ~ 9614060 (-)
LOC117597239 NA non-coding downstream 70550 9613268 ~ 9613480 (-)
G61967 ccs non-coding upstream 26869 9750821 ~ 9752285 (-)
G62023 NA non-coding upstream 203381 9927333 ~ 9939105 (-)
G62012 NA non-coding upstream 270659 9994611 ~ 9995711 (-)
LOC117597218 NA non-coding upstream 302387 10026339 ~ 10026551 (-)
LOC117596979 NA non-coding upstream 302922 10026874 ~ 10037983 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other downstream 155205 8639468 ~ 9528825 (-)
G61537 NA other downstream 345285 9337826 ~ 9338745 (-)
LOC113540087 LOC108267275 other downstream 356599 9314849 ~ 9327431 (-)
G61478 NA other downstream 699577 8983234 ~ 8984453 (-)
LOC113526753 LOC108267287,LOC108261139 other downstream 1088405 8571496 ~ 8595625 (-)
G61972 actn3,LOC106577856,LOC106608893 other upstream 52326 9776278 ~ 9805318 (-)
cxcl19 LOC108267987 other upstream 346454 10070406 ~ 10073229 (-)
LOC113540372 NA other upstream 354736 10078688 ~ 10080237 (-)
trnan-guu_9 NA other upstream 762716 10486668 ~ 10486741 (-)
trnan-guu_10 NA other upstream 766396 10490348 ~ 10490421 (-)

Expression


Co-expression Network