LOC117596979


Basic Information

Item Value
gene id LOC117596979
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10026874 ~ 10037983 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU73502
GAAAGGCATGACAAGTTTCTCCAACTACAGGTCTGAGTGGCGGTGGACATGGAGCCAGAAGAAGGTTCTCTGCTGAGTTTCAGGACTCCAGAGTTGAAAGGCTTTGAGAATGTTTCAGAAAAGGCACTATACACCATTTGTGTGAGAGTGTCTCACTACACCACATTCAAAGACTACAAGGAGTCAAAGTGGTCAGATTTGTTTGGGCCAGACTCGTCCCCCAAGGGCTGCTGGAGGTCCCTGTACAAACCTCCTATAGAGAAACGCACTGCAATGGAGTCCAATTGATCTCCAATGGAGGGTTGTTCAGTGGGCGGTAGCTACAAACAAACACGTGGCACGTATTGACCCCACTGTAGAGAAAG
>XR_004577931.1
aataaaatataagcgACTCGACAGGAAAGAGGGGGTTTGTAGGAAACTTACTGCGTTTTTAGAGCAGACACATGACATCATGTGACCTTCTAAAGCAACCTTAGAACAAATAGCTATAAGTGAaatgactgtgtgtatataaatggagtgtgtgtgtgtgtgtgtttctttcttgaCTCCATAATGTCAGTTCAATGACAAATGGAGCAAGTGATCATCCATCAAGTGTCCGactacacctctctctctctctctctctctctttacattctctctctctcacccgtGTGATGACCGAGAAAAAACGACCCTAAAGCTATGTGTGTTCTTCCACCTGGCGTCTGATCGAGGAACTGCAGGAGCCTTTAACTGCGGAAGTAACTCAGCCCTGTGGGCGCAAAGCATGATGGgaatgttcattcattcgtaTAAAGAGcaattttctgcttttattcGAGATGAATTCATGTCAGTTTTCCAGTCATGTTTTTTGGATAGTCTGTGTAGATAGCTgttcatttgcatgtgtgttatgTGCAGAATCTAAATACGTACCAGAATACCTGCCATCTTCAGGATCTGTGTGATATTTGAAGTGCTCGAGTGTCTGAGGAAGTGAGAGGTTAAGACTATACTTTCAGGGATCATTTCTATAGTCTCTAACTaggaaatgtgatttgaaaGCGTTACGTCTCTCTAATCACGATGACGAGGTCTGATGTGCTTTTCTGAGCGTGAATCGGGTTGAAACTAATGATTCGTTCATGAGTTTTAATCATTGATGAACGTTCTTCATTTCTTAGGAAATGTAAGAGGAAGAGTACATGATCAGAGTGATTATTACTGAATTGTTAATGAAagaattattatgttttattttggttagaattgttatgttatgtttttaatGGTGGAAGTAGAAGTGTttttagtgtaatgtaatgaaatggtGTGAGAGGTATTAAGTAAAAACGCGGTAAGTTGTGTGAATCTGGTCATATACGCGAATAAACACTCCATAGGAAGAATTCATGCCAGAAATAAAACTAAGTACTCTATACGTgtgatgttaaaataaaataaaataaatatggagTCACGTAAAATTTGTTAATCAGCACAACAcgctgcaaaaaacaaaaagtgctcTCACCAAGCAGAAGACTGAGACTCAGAAAATGGACATCAGCAAGAGGAAAGACTCTTTAAACTGGAATCACGGCCTTTCATATGGATCTATGGATTGAAATCAGTTTAAGACTGAAGGAGTTTTGGAGTTTTTGGGTGGGAGGGTGGAGAGTCTGAGGgcttttaaaacatgtaaatatgcaaaactgCTGCATTAAAGGCATCTTCAAATGTATCaagaagtctctctctctcgctgtgcATGCTGGGAGTGTGGGGAATGTGAGCGTCTCACAGGTGTGTGCCCGACGCCGGCGCCACAGTGGAGGATGTACTCGTGCTTCCAGGATGAACAAAGCTATGGTGATCTTTCTGAAGGAGTGGAGTTTAGTCAGTCATTTGATTGAGAGCGGAGTTTGGctgtgtgtgttcttccaCCTGGCGTCTGATCGAGGAACTGCAGGATCCTTTAACTGCGGAAGTAACTCAGTCCTGTGGGCGCAAAGCATGATGGgaatgttcattcattcgtaTAAAGAGcaattttctgcttttattcGAGATGAATTCATGTCAGTTTTCCAGTCATGTTTTTTGGATAGTCTGTGTAGATAGCTgttcatttgcatgtgtgttatgTGCAGAATCTAAATACGTACCAGAATACCTGCCATCTTCAGCATCTGTGTGATATTTGAAGTGCTCGAGTGTCTGAGGAAGTGAGAGGTTAAGACTATACTTTCAGGGATCATTTCTATAGTCTCTAACTaggaaatgtgatttgaaaGTGTTACGTCTCTCTAATCACGATGACGAGGTCTGATGTGCTTTTCTGAGCGTGAATCGGGTTGAAACTAATGATTCGTTCATGAGTTTAAATCATTGATGAACGTTCTTCATTTCTTAGGAAATGTGAGAGGAAGAGTACATGATCAGAGTGATTGTTA
>XR_004577932.1
gaataaaatataagcgACTCGACAGGAAAGAGGGGGTTTGTAGGAAACTTACTGCGTTTTTAGAGCAGACACATGACATCATGTGACCTTCTAAAGCAACCTTAGAACAAATAGCTATAAGTGAaatgactgtgtgtatataaatggagtgtgtgtgtgtgtgtgtttctttcttgaCTCCATAATGTCAGTTCAATGACAAATGGAGCAAGTGATCATCCATCAAGTGTCCGactacacctctctctctctctctctctctctttacattctctctctctcacccgtGTGATGACCGAGAAAAAACGACCCTAAAGCTATGTGTGTTCTTCCACCTGGCGTCTGATCGAGGAACTGCAGGAGCCTTTAACTGCGGAAGTAACTCAGCCCTGTGGGCGCAAAGCATGATGGgaatgttcattcattcgtaTAAAGAGcaattttctgcttttattcGAGATGAATTCATGTCAGTTTTCCAGTCATGTTTTTTGGATAGTCTGTGTAGATAGCTgttcatttgcatgtgtgttatgTGCAGAATCTAAATACGTACCAGAATACCTGCCATCTTCAGGATCTGTGTGATATTTGAAGTGCTCGAGTGTCTGAGGAAGTGAGAGGTTAAGACTATACTTTCAGGGATCATTTCTATAGTCTCTAACTaggaaatgtgatttgaaaGCGTTACGTCTCTCTAATCACGATGACGAGGTCTGATGTGCTTTTCTGAGCGTGAATCGGGTTGAAACTAATGATTCGTTCATGAGTTTTAATCATTGATGAACGTTCTTCATTTCTTAGGAAATGTAAGAGGAAGAGTACATGATCAGAGTGATTATTACTGAATTGTTAATGAAagaattattatgttttattttggttagaattgttatgttatgtttttaatGGTGGAAGTAGAAGTGTttttagtgtaatgtaatgaaatggtGTGAGAGGTATTAAGTAAAAACGCGGTAAGTTGTGTGAATCTGGTCATATACGCGAATAAACACTCCATAGGAAGAATTCATGCCAGAAATAAAACTAAGTACTCTATACGTgtgatgttaaaataaaataaaataaatatggagTCACGTAAAATTTGTTAATCAGCACAACAcgctgcaaaaaacaaaaagtgctcTCACCAAGCAGAAGACTGAGACTCAGAAAATGGACATCAGCAAGAGGAAAGACTCTTTAAACTGGAATCACGGCCTTTCATATGGATCTATGGATTGAAATCAGTTTAAGACTGAAGGAGTTTTGGAGTTTTTGGGTGGGAGGGTGGAGAGTCTGAGGgcttttaaaacatgtaaatatgcaaaactgCTGCATTAAAGGCATCTTCAAATGTATCaagaagtctctctctctcgctgtgcATGCTGGGAGTGTGGGGAATGTGAGCGTCTCACAGGTGTGTGCCCGACGCCGGCGCCACAGTGGAGGATGTACTCGTGCTTCCAGGATGAACAAAGCTATGGTGATCTTTCTGAAGGAGTGGAGTTTAGTCAGTCATTTGATTGAGAGCGGAGTTTGGTTTGGATTATTTCCATGTGAAGGTCAACACAGTAGAGCTGAGGACcagaaaaatggaagaaagtgaAGAAAGTGAGGAACagcagtgaatgagtgaatgtggtgATGCAGGAGAGTGAAGAGCCAGTGTGCAGTACAGGAGCTACAGGTGGagaacagctcacacacatgcagcacgGAGAGATCACATCAGATCAGCCAAGATTTTCAGACACTTCAGAAACCTtgcaaaacacactgcaaaaaacgAAAAGCGCTCTCACCAAGCAGAAGACTGAGACTCAGAAAATGGACATCAGCAACAGGAAAGACTCTTTAAACTGGATCACGGCCTTTCATATGGATCTATGGATTGAAATCAGTTTAAGACTGAAGGAGTTTTGGGTTTTTGGGTGGGAGGAAATAACCCCAACTTTTCACAGCATAAAGTATCATATGAAGGCTTAAGATTACAATGCCAATAATAAGTAGAGTGCTGTGCTAGAGCGCATCCAGTCCATCAGTTATATCAGTAAGTTCTCCCTGTGGTGGAGAAGGTTGTGGAGTATCTCCATCATCACTGCTTACAGTTCTCACCTCACACTGAACAGCACTTACACCAACTTCATCACCAGCACACACCTCCACTTTATCACTGCCATTAACACAATTCCTCACCACAGTTCTTTACAGTTACTTACTTCCTGATTGTCCTGCGTTTCATTCTGGGCCAAATCGACTCCCtaattttcagtttctttttcaattttgaGCAAAAACAAGGAGAAAGAAAACTTATGCTACACTTGAAACTGCCAGGTGGGACTTCAACATCTAATccaaaagaaatgagaaaacttgCAAAGGACTTTTACACCGAATTGTTTAAAGCTGGAGAATGTGACAATAGACAAATGGCTATCTACTAAGGGACCTGCCAAAGTTGACTGATGCTCAGAGACAATGCCTTGATGCTAATATCCAATCAGAGGAAATGTCAGAAGCTGTAAAACAACTCTCTACAGGTCAATCTCCAGGTATAGATGAACTTCCTTCTGAATTTTATAAGCACTTTTGGTTCTATAGGACTGCTCATAGGAAAAATGAACTGCCGACCAGTTGCAGAAGAGCACTTTTATCTTTATTACCCAAAAAAGGTGACCTTGGACTGCTAAAGAACAGGAGACCAGTAGCAATACTGTGTACTGACTGCAAAATTCTTGCTAAGTGGCTTTCAAATAGatgaaaaaattttttagaaTATGTTATTAATGATTACCAGACCTATTGTGTGCCAAACAGAGCAATAATGGATAATCTTTTTCTTGTGCATGATGTGATAAATATAGCTAATGGTAATAATGAAGATATAGGATTACTTTTAATTGATCGAGAGTAAGCCTTCGATAGGGTTGATCATCTTTATCTATTTTAAACCCATAAAGCATTTGGTTTTGGTCATAGTTTTATTTCATGGATTAAACTTTTATACAGTGGCGCATCTGCATTGATAAAGGCAGGGGGTGTTCTAAGTTATCCAGTGTTAGTTAATAGTGGTATAAGGCAAGGCTCTCCATTATCAGGGCAGTTGTACTCTTTGGCTATTGAGCCTTTGCTCTGCCATCTGAAGAAGAAATAGCAGGGGTTTCAAATTGACGTTTTCGAAAATAAACTAATTACCTTTTCTGCCTATGCTGATGATGTAACAGTTTTTTTATAAGAAGTGACAATGATGTATATAATTTAACAAAACTTTTAAACAATTATGAAAAGGCCTCATCAACTAAAGTAAATTGGGAAAAGAGTGAAGGATACCTAATGGGAGATTGGCATGGAAGGGCCACCCCCCCAGTTCTTCCAGGGAGAGTTAAATGGGGACAAGAAGGTTTGAAGATGTTAGGAGTGTATTTAGGAATGGAACAATATCAGCAGAAAAACTGGGAGGGTATGGTGGAGAAAATGTGTGACCGATTGTCTCGATGGTCTTGGGTACTGCCGCAGCTATCTTATAGGGGGTAGGGTTTTGGTCACGAACAATCTGGCCGCTTCTGCTTTATGGCGTAAAATGAATGTTCTGGAGCCCCCAGCCAGTGTTGTTCAAGAACTACAAAAGAAGCTAATTGGTTTCTTTTGAGATGGACAGCACTGGACAAAAGCTGCTGTACTTTTCCTGCCCATTCAAGAGGGAAGAATTTCAGACTTCAAGCAGCACAAAGATTGCTGTATTTGGAACCTTGCTGGGCTGATATAGCTCGTGCTCTGTTACCAAAAGCAGATGTTCTCAAATACAATATGCAACTGTTTTTAATCGGACTGGTTAACATGGAATGACATTTCCCCATTCTATAAAGCAGTTTTAAGAGCATGGGCCTCAGTTTTTAAAGTTAAGAGGAAGCTCACAAATCTGACCAGCATCAAGTGTACAAGAATCATGAAGAGAATAATGGAAGGAATATTTTCAACAATACCTGTACCTCTTCAGACAAAGTTTAGCAGAAAATGAACTTGCTGAACAGGACAGAGAAAGGCATGACAAGTTTCTCCAACTACAGGTCTGAGTGGCGGTGGACTTGGAGCCAGAAGAAGGTTCTCTGCTGAGTTTCAGGACTCCAGAGTTGAAAGGCTTTGAGAATGTTTCAGAAAAGGCACTATACACCATTTGTGTGAGAGTGTCTCACTACACCACATTCAAAGACTACAAGGAGTCAAAGTGGTCAGATTTGTTTGGGCCAGACTCGTCCCCCAAGGGCTGCTGGAGGTCCCTGTACAAACCTCCTATAGAGAAACGCACTGCAATGGAGTCCAATTGATCTCCAATGGAGGGTTGTTCAGTGGGCGGTAGCTACAAACAAACACGTGGCACGTATTGACCCCACTGTAGAGAAAGAGTGTCCTTTTTGTAGCACTGAAGAGTCAGTAGATTATTTGGATTTTAGAGTGATGGGTCAGAAGACTTGGGAGAGGTTCTGatgaaaaactttttatttttggaccTAAATATGTTGCctcaaggaggaaaaaaaaaattctttgatCACCTTTTTGGTGGAAGAAGCAAATCTGGCCATATGgttaacacaaaaaaagaaattgaaaggAGAGGGTGTAGCAGACCCTGAGACTGTGTTAAAGGCACTTATAGCTGCTAGAATTAGGGCTGAGTTTGCATACTTTAAGTTGACAAACAATCTGGATGGTTTTATTGAAGCTTGGGCTTTGAATGATGTTCTGTGTACAGTGGACTAGGATAATGAACTAATTTAAAATTTGTGAAGCATGTTTTTAAGCACATATATGTATGAATTTCAACTGTAAAAATGAGAATTGTGCAAGTGTATTTATTAGGgggttgttttcttttttcctcttctcctcgATGAGTGATATTGCTTATGATCCTTTCTCTTTAAAGATATGTACAGCAAATGACGGTCAGATAAATGTGAAACACATTAATACagtgtaaacataaataaagctgagtgaaaagtctctctctctctctctctctctctctcacccgtGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73502 False 365 lncRNA 0.48 2 10027513 10032420
XR_004577931.1 False 2075 lncRNA 0.40 3 10030877 10037982
XR_004577932.1 True 5053 lncRNA 0.40 3 10026874 10037983

Neighbor

gene id symbol gene type direction distance location
intu intu coding downstream 3097 9997315 ~ 10023777 (-)
aadat aadat,LOC102781018 coding downstream 34007 9980997 ~ 9992867 (-)
mfap3l mfap3l coding downstream 46208 9972383 ~ 9980666 (-)
pfdn2 pfdn2,LOC107745204 coding downstream 107083 9914234 ~ 9919791 (-)
b4gat1 b4gat1,LOC107747893,LOC107745213,LOC107692823,LOC107696735 coding downstream 115102 9907559 ~ 9911772 (-)
trmt10b trmt10b coding upstream 8589 10046572 ~ 10053214 (-)
LOC113540363 NA coding upstream 55764 10093747 ~ 10095116 (-)
LOC113540311 LOC108267981 coding upstream 57796 10095779 ~ 10106529 (-)
LOC117597105 LOC108267929 coding upstream 73179 10111162 ~ 10143429 (-)
LOC113538503 LOC108261535 coding upstream 129934 10167917 ~ 10189928 (-)
LOC117597218 NA non-coding downstream 323 10026339 ~ 10026551 (-)
G62012 NA non-coding downstream 31163 9994611 ~ 9995711 (-)
G62023 NA non-coding downstream 87769 9927333 ~ 9939105 (-)
G61967 ccs non-coding downstream 274589 9750821 ~ 9752285 (-)
G61934 pacs1,LOC108440271,LOC103376102 non-coding downstream 302922 9684030 ~ 9723952 (-)
LOC113540720 NA non-coding upstream 571 10038554 ~ 10038766 (-)
LOC113540709 NA non-coding upstream 1397 10039380 ~ 10039587 (-)
LOC117597227 NA non-coding upstream 2499 10040482 ~ 10040694 (-)
LOC113540700 NA non-coding upstream 3584 10041567 ~ 10041779 (-)
LOC113540369 LOC108267738,LOC108267937,LOC108267740,LOC108267931,LOC108267932,LOC108267929 non-coding upstream 164248 10202231 ~ 10211232 (-)
G61972 actn3,LOC106577856,LOC106608893 other downstream 221556 9776278 ~ 9805318 (-)
LOC113526752 LOC100862731,LOC108267340,LOC108267722,LOC108267272,LOC108267273,LOC108261494,LOC108267212,LOC108261855,LOC100379168 other downstream 498049 8639468 ~ 9528825 (-)
cxcl19 LOC108267987 other upstream 32423 10070406 ~ 10073229 (-)
LOC113540372 NA other upstream 40705 10078688 ~ 10080237 (-)
trnan-guu_9 NA other upstream 448685 10486668 ~ 10486741 (-)
trnan-guu_10 NA other upstream 452365 10490348 ~ 10490421 (-)
trnan-guu_11 NA other upstream 453607 10491590 ~ 10491663 (-)

Expression


Co-expression Network