G62108 (LOC108267978,LOC108411458)


Basic Information

Item Value
gene id G62108
gene name LOC108267978,LOC108411458
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10364012 ~ 10364892 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU73581
TCTCTTCAGTTTTGTCAGATTAGCCAAAGAATATTATTTCTACAGACTTACTTAAATTATACCTATTATaagttaaatgttttctgtagatGCAGGTAGAAAGTATTAGATTGCCTCACATGTCAACACAGCTTTTATGATCCCTTTTTGTGCTTGAGACTCCAttattctttgtttctttcttctctctcttgctctccttTTCCCTTCCACCTCAATCCCTAGGAGTAAAGGGTCACATTCGTAATGTCTTCCCCCACTTTCCTTTACCATCTCCTCAATTTTCCTTATCAGTTCTTTCACCTGAGCTCCATCTTTGCCACAGCGTTTGTTTTCAAGCACATGGAACCTGTTTCCACACCTCTCAAGAAGCTTCTGAAAGGATTTTCCTGCATTTTTTATTCTCTGTTCTATGGGAATGGAGCCTAGTTCCTCCCCACGTGTGAATAGCAGCATGGTGTGAGCCCATGCTGTCTTGCCCAAAAGCTCCAAGTGTTCTTCCACCTGCCTGTAGTAGTCCTCTGTGACTGAGGCAAAGGACCGTATCACCAGAAGCAAAGCATGTGGTCCAGGCGGGCAGACTGTCACGCTTCTCATTGTCTCTCTTGTCACCCAGGCAGGAGTGCCATTGCCAGAATAGTACCATTCCCACCCTGGAGTATCTACCACTGTAACACGATGGCTTGCTATGTCAGCTCGTCttttcacacactcctctgttGGTTTGCCACTCTCAAATCCTCCAGCCACACCAAGAATGGTGTTTCCTGAAGAACTTTTCCCAGTTCCTTTGCGGCCTAGTAGGACCAGGCGCAGCTCTGGGAGAGGAGGATTATCATGATGAGGGCTCCCTGCTGTCTTTGCTGCAGCCTGCTGTTTGG

Function

NR:

description
PREDICTED: trichohyalin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73581 True 881 lncRNA 0.46 1 10364012 10364892

Neighbor

gene id symbol gene type direction distance location
f13a1b LOC108267979,LOC108411459 coding downstream 4609 10346280 ~ 10359403 (-)
LOC113540334 LOC108267980 coding downstream 19881 10333469 ~ 10344131 (-)
LOC117596978 LOC108267983,LOC108267929 coding downstream 43812 10308651 ~ 10320200 (-)
LOC113547269 NA coding downstream 127400 10231674 ~ 10236612 (-)
LOC113538503 LOC108261535 coding downstream 174084 10167917 ~ 10189928 (-)
tex261 tex261,LOC107755640 coding upstream 33661 10398553 ~ 10404916 (-)
shtn2 LOC108267975 coding upstream 41220 10406112 ~ 10416565 (-)
vax2 vax2,LOC107697471 coding upstream 65397 10430289 ~ 10448477 (-)
c4h20orf27 c7h20orf27,cunh20orf27,si:ch211-74f19.2,LOC107755635 coding upstream 95327 10460219 ~ 10474141 (-)
trnan-guu NA coding upstream 109504 10474396 ~ 10474470 (-)
LOC113540369 LOC108267738,LOC108267937,LOC108267740,LOC108267931,LOC108267932,LOC108267929 non-coding downstream 152780 10202231 ~ 10211232 (-)
LOC113540700 NA non-coding downstream 322233 10041567 ~ 10041779 (-)
LOC117597227 NA non-coding downstream 323318 10040482 ~ 10040694 (-)
LOC113540709 NA non-coding downstream 324425 10039380 ~ 10039587 (-)
LOC113540720 NA non-coding downstream 325246 10038554 ~ 10038766 (-)
G62109 LOC108267978 non-coding upstream 3429 10368321 ~ 10370563 (-)
G62125 NA non-coding upstream 109878 10474770 ~ 10483928 (-)
LOC117596989 NA non-coding upstream 132629 10497521 ~ 10499087 (-)
G62167 NA non-coding upstream 169181 10534073 ~ 10534422 (-)
G62183 NA non-coding upstream 207263 10572155 ~ 10572360 (-)
LOC113540372 NA other downstream 283775 10078688 ~ 10080237 (-)
cxcl19 LOC108267987 other downstream 290783 10070406 ~ 10073229 (-)
G61900 NA other downstream 322246 9605727 ~ 10041766 (-)
G61972 actn3,LOC106577856,LOC106608893 other downstream 558694 9776278 ~ 9805318 (-)
G61537 NA other downstream 1025267 9337826 ~ 9338745 (-)
trnan-guu_9 NA other upstream 121776 10486668 ~ 10486741 (-)
trnan-guu_10 NA other upstream 125456 10490348 ~ 10490421 (-)
trnan-guu_11 NA other upstream 126698 10491590 ~ 10491663 (-)
trnan-guu_12 NA other upstream 130273 10495165 ~ 10495238 (-)
gba2 gba2,LOC107749818,LOC107741462 other upstream 173353 10538245 ~ 10562006 (-)

Expression


Co-expression Network