G62131


Basic Information

Item Value
gene id G62131
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10497130 ~ 10497360 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU73615
AACTGAAGTCTGCTATGGACTTagcaattttaaaatttaagtaaataaagatATGTAAATATCAAAGTCAACTGTTCAATAAACAAGATGCATAGGCAATTAGAGTAAATTGCACGTACCAGAAAAGactgattaaagaaaaacatgactGATCTTTACTGAATACAGCAACAAAGTTGATAACTTTGCTGCACACATACCATatgaaaaccacacacacatccaactCTC

Function

NR:

description
myocyte-specific enhancer factor 2C isoform X12

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73615 True 231 lncRNA 0.32 1 10497130 10497360

Neighbor

gene id symbol gene type direction distance location
trnak-cuu_12 NA coding upstream 12613 10484444 ~ 10484517 (+)
LOC117597108 NA coding upstream 12983 10482489 ~ 10484147 (+)
trnak-cuu_11 NA coding upstream 13844 10483214 ~ 10483286 (+)
trnak-cuu_10 NA coding upstream 15076 10481982 ~ 10482054 (+)
trnak-cuu_9 NA coding upstream 16311 10480747 ~ 10480819 (+)
rgp1 rgp1,LOC107741481,LOC107668635,LOC107588171,LOC107691996 coding downstream 64872 10562232 ~ 10569484 (+)
trnak-cuu_21 NA coding downstream 68293 10565653 ~ 10565724 (+)
pik3c3 pik3c3,LOC107691920,LOC107562280 coding downstream 77563 10574923 ~ 10595122 (+)
faah2b LOC108267965 coding downstream 138345 10635705 ~ 10644751 (+)
nat8l nat8l,LOC107691926,LOC107741469,LOC107562319,LOC107753918,LOC107588165 coding downstream 181897 10679257 ~ 10689652 (+)
G61842 NA non-coding upstream 138166 10357814 ~ 10358964 (+)
G61785 LOC108267738,LOC108267740,LOC108267935,LOC108267929 non-coding upstream 199566 10165529 ~ 10297564 (+)
LOC117596987 NA non-coding upstream 206446 10289874 ~ 10290684 (+)
LOC113540370 NA non-coding upstream 401062 10024585 ~ 10096068 (+)
G61735 NA non-coding upstream 449579 10046592 ~ 10047551 (+)
LOC117596986 NA non-coding downstream 1915 10499275 ~ 10506477 (+)
trnan-guu_13 NA non-coding downstream 33611 10530971 ~ 10531044 (+)
trnak-cuu_20 NA non-coding downstream 34096 10531456 ~ 10531528 (+)
LOC117596985 NA non-coding downstream 318390 10815750 ~ 10816552 (+)
G62373 NA non-coding downstream 367295 10864655 ~ 10864861 (+)
trnak-cuu_19 NA other upstream 1660 10495398 ~ 10495470 (+)
trnak-cuu_18 NA other upstream 5261 10491797 ~ 10491869 (+)
trnak-cuu_17 NA other upstream 6480 10490578 ~ 10490650 (+)
trnak-cuu_16 NA other upstream 7694 10489365 ~ 10489436 (+)
trnak-cuu_15 NA other upstream 8918 10488140 ~ 10488212 (+)
c4h4orf48 c7h4orf48 other downstream 159997 10657357 ~ 10663411 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other downstream 1093355 11590715 ~ 11605230 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other downstream 1147541 11644901 ~ 11705336 (+)
si:dkey-112a7.4 LOC108268066 other downstream 1795131 12292491 ~ 12295133 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 2709297 13206657 ~ 13219859 (+)

Expression


Co-expression Network