G62167


Basic Information

Item Value
gene id G62167
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10534073 ~ 10534422 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU73654
GGGATTATTTAGATGTTCATAAACACTGTCATTCTCAATTGTGTAGCTGGCCCTTCGCACTAATAGCTGGATTTCAAAGGCAAGTTTCTGTTTCTCAAGCTCAAGCTTCTCCTTTTCCACCTTTAACTTCTCCGTCTCCATCAGAGCTGAAGGCAAGTTGGATCTGCAGCTTCAGTAAAATTCCCAAGGTATGTAATTCaggcttttgttttgtttttcagtaatgACCTGCCTTTGTTCAAGTTTTGACCCTATTTCTTGCACTTATTAGGAAACCAGTGATCAGCCTGCCTCCATGTCTGGTGCTCCCCCTACCCCGACCTCTGCCCAGATGGCGAGACTACCTCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73654 True 350 lncRNA 0.45 1 10534073 10534422

Neighbor

gene id symbol gene type direction distance location
trnan-guu_8 NA coding downstream 48561 10485439 ~ 10485512 (-)
trnan-guu_7 NA coding downstream 49790 10484209 ~ 10484283 (-)
trnan-guu_6 NA coding downstream 51019 10482981 ~ 10483054 (-)
trnan-guu_5 NA coding downstream 52251 10481749 ~ 10481822 (-)
trnan-guu_4 NA coding downstream 53482 10480517 ~ 10480591 (-)
msmp msmp coding upstream 35130 10569552 ~ 10574841 (-)
si:dkeyp-75h12.7 NA coding upstream 61271 10595693 ~ 10601685 (-)
tesk1 tesk1 coding upstream 67415 10601837 ~ 10631020 (-)
nelfa nelfa,LOC107562310,LOC107741467,LOC107753914,LOC107691925,LOC107588166 coding upstream 112229 10646651 ~ 10658141 (-)
haus3 haus3 coding upstream 213350 10747772 ~ 10754568 (-)
LOC117596989 NA non-coding downstream 34986 10497521 ~ 10499087 (-)
G62125 NA non-coding downstream 50145 10474770 ~ 10483928 (-)
G62109 LOC108267978 non-coding downstream 163510 10368321 ~ 10370563 (-)
G62108 LOC108267978,LOC108411458 non-coding downstream 169181 10364012 ~ 10364892 (-)
LOC113540369 LOC108267738,LOC108267937,LOC108267740,LOC108267931,LOC108267932,LOC108267929 non-coding downstream 322841 10202231 ~ 10211232 (-)
G62183 NA non-coding upstream 37733 10572155 ~ 10572360 (-)
G62469 LOC108267929 non-coding upstream 392418 10926840 ~ 10953744 (-)
G62504 LOC108267929,LOC108261535 non-coding upstream 507923 11042345 ~ 11074703 (-)
LOC117596980 NA non-coding upstream 546109 11080531 ~ 11083012 (-)
G62743 NA non-coding upstream 777992 11312414 ~ 11345959 (-)
trnan-guu_12 NA other downstream 38835 10495165 ~ 10495238 (-)
trnan-guu_11 NA other downstream 42410 10491590 ~ 10491663 (-)
trnan-guu_10 NA other downstream 43652 10490348 ~ 10490421 (-)
trnan-guu_9 NA other downstream 47332 10486668 ~ 10486741 (-)
LOC113540372 NA other downstream 453836 10078688 ~ 10080237 (-)
gba2 gba2,LOC107749818,LOC107741462 other upstream 3823 10538245 ~ 10562006 (-)
poln poln,LOC107563414 other upstream 158835 10693257 ~ 10747646 (-)
svep1 svep1 other upstream 240830 10775252 ~ 10863498 (-)
nedd8 nedd8,LOC107588156,LOC108440049,LOC107562413,LOC103040682,LOC103358415,LOC106608856 other upstream 372603 10907025 ~ 10910211 (-)
mrpl52 mrpl52 other upstream 643263 11177685 ~ 11182369 (-)

Expression


Co-expression Network