nedd8 (nedd8,LOC107588156,LOC108440049,LOC107562413,LOC103040682,LOC103358415,LOC106608856)


Basic Information

Item Value
gene id nedd8
gene name nedd8,LOC107588156,LOC108440049,LOC107562413,LOC103040682,LOC103358415,LOC106608856
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 10907025 ~ 10910211 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU73964
AGCTACTCAGGAACTTCAATTGAATGCAAAAGATAAATCCAAGGAATTATTGATAGAGGaatattctgtcttttttcttgcCTTATTGGTTTTACTTTTTGCGTTTATTCACCGCGTGTGTTTAAGCAACACAAAAGCCACAATGCTGATTAAAGTTAAGACCCTGACTGGTAAAGAAATAGAAATCGACATCGAGCCCACAGACAAGgtggaaagaataaaagaaagagtgGAGGAAAAAGAGGGAATTCCACCCCAGCAACAGAGACTCATCTACAGTGGAAAACAGATGAACGATGAGAAAACAGCAGCAGACTATAAAATCCAGGGTGGCTCTGTATTGCATCTGGTCCTTGCGCTAAGAGGAGGGCGAGTGCACCAACACCCCAACAACCTCCTGCAGGCCTTATAAACACCAGACCTGCCTTCAGCACCACAGGTGACCTGGCagcctcaacacacacacacacacaccactcttcCCTAAACGACCATCTGACCCAAACTCCACGGTGGCGACTCTGCTGGCTATTGTGTAACAAAGTCTCTATGTTCTGTAGcaaactacagcatcttcctgtCCACATCCCTCTTCCCCTAATTTATCCTTCTTAGAGAACTGTCACGCTTGATTTGT
>XM_026936817.2
TTAACCCGCTATTTTGCTTTTAGTTCCGTCCCAAAGTTAAACACAGACTGTTTACGTATTTGTTGAAttacatatgaaaataattacttattaattatATTGGCGTATTTATTTGTCGTTATAACTCATTTATTTCcaagaaaattaatttattctcGTAGTTTCTGTCGGAACTCTTAATTCAGACTAGTGGATGGTAGGAATTATTTGTGAGCTACTCAGGAACTTCAATTGAATGCAAAAGATAAATCCAAGGAATTATTGATAGAGGaatattctgtcttttttcttgcCTTATTGGTTTTACTTTTTGCGTTTATTCACCGCGTGTGTTTAAGCAACACAAAAGCCACAATGCTGATTAAAGTTAAGACCCTGACTGGTAAAGAAATAGAAATCGACATCGAGCCCACAGACAAGgtggaaagaataaaagaaagagtgGAGGAAAAAGAGGGAATTCCACCCCAGCAACAGAGACTCATCTACAGTGGAAAACAGATGAACGATGAGAAAACAGCAGCAGACTATAAAATCCAGGGTGGCTCTGTATTGCATCTGGTCCTTGCGCTAAGAGGAGGGCGAGTGCACCAACACCCCAACAACCTCCTGCAGGCCTTATAAACACCAGACCTGCCTTCAGCACCACAGGTGACCTGGCagcctcaacacacacacacacacaccactcttcCCTAAACGACCATCTGACCCAAACTCCACGGTGGCGACTCTGCTGGCTATTGTGTAACAAAGTCTCTATGTTCTGTAGcaaactacagcatcttcctgtCCACATCCCTCTTCCCCTAATTTATCCTTCTTAGAGAACTGTCACGCTTGATTTGTGAAGTTTACAATGAGTGATGCTGAAAAATCATTGTTAAAGTGAAACTGATGCAATAGAATCATTTGTCAATAAAACACAGTATTGACATTTTTTCTCCCTGA

Function

symbol description
nedd8 Predicted to enable protein tag and ubiquitin protein ligase binding activity. Acts upstream of or within defense response to virus. Predicted to be active in cytoplasm and nucleus. Is expressed in brain. Orthologous to human NEDD8 (NEDD8 ubiquitin like modifier).

NR:

description
neural precursor cell expressed, developmentally down-regulated 8

GO: NA

KEGG:

id description
K12158 NEDD8; ubiquitin-like protein Nedd8

RNA

RNA id representative length rna type GC content exon number start site end site
TU73964 False 637 TUCP 0.45 4 10907127 10909999
XM_026936817.2 True 951 mRNA 0.40 4 10907025 10910211

Neighbor

gene id symbol gene type direction distance location
haus3 haus3 coding downstream 152457 10747772 ~ 10754568 (-)
nelfa nelfa,LOC107562310,LOC107741467,LOC107753914,LOC107691925,LOC107588166 coding downstream 248884 10646651 ~ 10658141 (-)
tesk1 tesk1 coding downstream 276005 10601837 ~ 10631020 (-)
si:dkeyp-75h12.7 NA coding downstream 305340 10595693 ~ 10601685 (-)
msmp msmp coding downstream 332184 10569552 ~ 10574841 (-)
LOC113540343 NA coding upstream 112659 11022870 ~ 11023641 (-)
LOC113539898 LOC108267947 coding upstream 227204 11137415 ~ 11146874 (-)
lrp10 lrp10 coding upstream 236741 11146952 ~ 11157112 (-)
acin1b acin1,LOC108267949 coding upstream 282321 11192532 ~ 11217230 (-)
LOC113540753 NA coding upstream 298522 11208733 ~ 11208833 (-)
G62183 NA non-coding downstream 334665 10572155 ~ 10572360 (-)
G62167 NA non-coding downstream 372603 10534073 ~ 10534422 (-)
LOC117596989 NA non-coding downstream 407938 10497521 ~ 10499087 (-)
G62125 NA non-coding downstream 423097 10474770 ~ 10483928 (-)
G62109 LOC108267978 non-coding downstream 536462 10368321 ~ 10370563 (-)
G62469 LOC108267929 non-coding upstream 16629 10926840 ~ 10953744 (-)
G62504 LOC108267929,LOC108261535 non-coding upstream 132134 11042345 ~ 11074703 (-)
LOC117596980 NA non-coding upstream 170320 11080531 ~ 11083012 (-)
G62743 NA non-coding upstream 402203 11312414 ~ 11345959 (-)
G62754 NA non-coding upstream 411159 11321370 ~ 11361429 (-)
svep1 svep1 other downstream 43527 10775252 ~ 10863498 (-)
poln poln,LOC107563414 other downstream 159379 10693257 ~ 10747646 (-)
gba2 gba2,LOC107749818,LOC107741462 other downstream 345019 10538245 ~ 10562006 (-)
trnan-guu_12 NA other downstream 411787 10495165 ~ 10495238 (-)
trnan-guu_11 NA other downstream 415362 10491590 ~ 10491663 (-)
mrpl52 mrpl52 other upstream 267474 11177685 ~ 11182369 (-)
LOC113540328 LOC108267738,LOC108267931,LOC108267739,LOC108267932,LOC108267933,LOC108267740,LOC108261673,LOC108267241,LOC108267937,LOC108267929 other upstream 356173 11266384 ~ 11360044 (-)
LOC113538166 LOC108267929,LOC108261535,LOC108267954,LOC103358416,LOC107753927 other upstream 376238 11286449 ~ 11313616 (-)
si:dkey-183c6.7 LOC108267942 other upstream 491816 11402027 ~ 11415897 (-)
LOC117597110 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267938,LOC108261673,LOC108267241,LOC108267937,LOC108267740,LOC108267935 other upstream 614615 11524826 ~ 11535243 (-)

Expression


Co-expression Network