LOC117596972 (LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740)


Basic Information

Item Value
gene id LOC117596972
gene name LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11590715 ~ 11605230 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU74113
ACGAAGTGAAAGTAAATTCTTTTTTATACTAGACTCTGAAAGGACTTTAAACACAGACCATTCTCACTCCCTGAAAAGAGGCAAGTAAAATAAAGGTTAAAAACACAGGAGGAAGTAAACGACTGAATCTACATCACAAACAAAAGGCGGAAGAAGGAAGAGCATGGAAGAACCACCTTCATtccATGTTGGTCGTGACTCCAGCAGTCTCCTGTCTGAAGAGCAGCTGCTGTGTTCGATCTGTCTGGATGTGTTCACTGATCCAGTCACCACTCCATGTGGACACAACTTCTGCAAGAGCTGCCTTACACAGTGCTGGGAGAAGAGTCAACACTGTCACTGTCCATTATGTAAAGAGAAATTCACCAAGAGACCTGAACTGAAGATTAATACAACACTGA
>TU74121
GTGAAAGCGGAAATCAGGTTAAAAACACAGGAGGAAGTAAACGACTGAATCTACATCACAAACAAAAGGCGGAAGAAGGAAGAGCATGGAAGAACCACCTTCATtccATGTTGGTCGTGACTCCAGCAGTCTCCTGTCTGAAGAGCAGCTGCTGTGTTCGATCTGTCTGGATGTGTTCACTGATCCAGTCACCACTCCATGTGGACACAACTTCTGCAAGAGCTGCCTTACACAGTGCTGGGAGAAGAGTCAACACTGTCACTGTCCATTATGTAAAGAGAAATTCACCAAGAGACCTGAACTGAAGATTAATACAACACTGA
>XM_034303238.1
ACCCTAACGAAGTGAAAGCGGAAATCAGTTACAGTAGCTCCCATCGATCATAAACTCTTCATTTTATACTAAACTCTTTTTATACTAAATTCTTTTTATACTAGACTCTGAAAGGACTTTAAACACAGACCATTCTCACTCCCTGAAAAGAGGCAAGTAAAATAAAGGTTAAAAACACAGGAGGAAGTAAATGGCTGAATCTACATCACAAACAAAAGGCAGAAGAAGGAGGAGCATGGAAGAACCAGGTTCATTTGCTCGTGACTCCAGCAGTCTCCTGTCTGAAGAGCAGCTGCTGTGTTCGATCTGTCTGGATGTGTTCACTGATCCAGTCACCACTCCATGTGGACACAACTTCTGCAAGAGCTGCCTTACACAGTGCTGGGAGAAGAGTCAACACTGTCACTGTCCATTATGTAAAGACAACTTCACCAAGAGACCTGAACTGAAGATTAATACAACACTGAGAGAGGTTGCAGATCACTTCAAGAAGAAAAGTGGTCCTGACAAACCTGAGGTTCTTTGTGACGCCTGCACTGGAGAGAAGCTGAAGGCCCTGAAATCCTGTCTCGATTGTTGTGCAGCTTTCTGTAAAACTCATTTAGAGCCACATAATAACATTCCAAAGCTCAAGAAACACAAACTAATAAACCCTGTAGAGAACCTGCAGGACTACATATGCCAGAAACATGAGAGAGCTCTGGAGCTGTTCTGTAGAGATgatcagacgtgtgtgtgtcagttctgCACTGAAGGAGATCACAAGAATCACAACACTGTTCCTATAGAggaggagagcagagagaggaagACTCAGCTGGggaaaacacagacagatgtgCAGCAGATGATTCAGGACCAAATGAAGAAGATCCAAGAGATCAAACACTCAGTAGAGCtcagtaaaAgaagcacagagaaagagaaagcagacaGTGTTGAAGTCTTCACTGCTCTGATTCGCTCCATTGAGAGAAGTCAGGCTGAGCTGCTCGAGGTGAtggaggagaagcagaaagCAGCAGAGAGGCAGGCTGAAGGACTCATTAAAGAGCTGGAGCAGGAAATCACTGTGCTAAAGAGGAGAGacactgagctggagcagctctcacacactgaggAGCATCTCCACCTCCTACAGATTTACTCCTCCATGTGCAGCCCTCCACACACCAAGAACTGGACTGAGATCAGTATTAACACTGATCTGAGTGGGGACACTGTGAGGACAGCTCTGTCTCAGCTTCAGCAGACTCTGAATGAGAAACTCACTAAAACACTCAATGACAAGTTAAAGGAAACAGTTTCCACAGAACTGAAGAGGATTCAGCAGTATGCAGtggATGTGACTCTGGATCCTGATACAGCTCATCCCAATCTCATCCTGTCTGCTGATGGAAAACAAGTGACAGACGGAGACGAGTGGAGGGATCTCCCTGATACACCACAGAGGTTTAAttattgtgtctgtgttctgggAAAGCAGAGTTTCTCCTCAGGGAGATTCTATTATGAGGTGCAGGTCAGAGGGAAAACTGATTGGGATCTCGGAGTCACCACAGAGTCCAGTAACAGGAAAGGGGACGTTACACTGAGACCTCAGAATggattctggactgtgattcTGAGGAATGAGAATCAGTACTTGGCTTGTGCTGGTCCTGACGTCCCcctcacactgagagagaaggtGGAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCTGGTCTCCTTTTATGATGTGGAGTCCAGCTCTCATATCTACTCTTTCACTGGTCAGTCTTTCACTGAGAAACTCTATCCATACTTCAGTCCTTATTTAAATGAAGGAGGTAAAAATTCAGCATCACTGATCATCTCTCctgtatttaacactgaatgaaTTTTCACCTCACAGATTTAATCATCTATTAAATGgtgagaataaaaagaaatatattttttggtgAATTTTAGAAATACATACTCCCTTATACAATGctg

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM39-like isoform X1

GO: NA

KEGG:

id description
K12015 TRIM39; tripartite motif-containing protein 39

RNA

RNA id representative length rna type GC content exon number start site end site
TU74113 False 401 lncRNA 0.43 3 11602448 11605230
TU74121 False 323 lncRNA 0.46 3 11590726 11605230
XM_034303238.1 True 1989 mRNA 0.44 8 11590715 11600351

Neighbor

gene id symbol gene type direction distance location
LOC117596971 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267740,LOC108267937,LOC108267938,LOC108261673 coding upstream 8293 11467950 ~ 11582422 (+)
LOC117596977 LOC108267738,LOC108267937,LOC108267739,LOC108267932,LOC108267931,LOC108261673 coding upstream 127968 11453930 ~ 11462747 (+)
LOC113539902 LOC108267738,LOC108267739,LOC108267932,LOC108267740,LOC108267931,LOC108261673,LOC108267937,LOC108267938 coding upstream 145530 11440088 ~ 11445185 (+)
si:dkey-183c6.8 LOC108267925,LOC108434846 coding upstream 190109 11383434 ~ 11400606 (+)
cideb cideb,LOC108440045 coding upstream 332053 11255938 ~ 11258662 (+)
vbp1 vbp1,LOC107588140,LOC107668907,LOC107562614,LOC107742288,LOC107691952 coding downstream 8538 11613768 ~ 11619677 (+)
zgc:162171 LOC108267158 coding downstream 26746 11631976 ~ 11637570 (+)
zgc:92429 zgc:92429,LOC108267498,LOC103044742,LOC108434854 coding downstream 102229 11707459 ~ 11716739 (+)
gpr185b gpr185b,LOC108267436,LOC107669001,LOC107562838,LOC107588216,LOC107742332,LOC107691958 coding downstream 213536 11818766 ~ 11824148 (+)
si:dkey-171c9.3 LOC108268329 coding downstream 480949 12086179 ~ 12093053 (+)
LOC117596988 NA non-coding upstream 126109 11463083 ~ 11464606 (+)
G62618 NA non-coding upstream 152860 11437529 ~ 11437855 (+)
LOC113540368 NA non-coding upstream 169537 11418007 ~ 11421178 (+)
G62572 LOC108261673,LOC108267931,LOC108267740,LOC108267738,LOC108267932,LOC108267935,LOC108267938 non-coding upstream 223932 11275439 ~ 11366783 (+)
G62585 LOC108267738,LOC108267739,LOC108267932,LOC108267937,LOC108267938,LOC108267241,LOC108267941 non-coding upstream 230200 11320097 ~ 11360515 (+)
G62639 NA non-coding downstream 3526 11608756 ~ 11609269 (+)
G62640 NA non-coding downstream 5606 11610836 ~ 11611057 (+)
G62654 NA non-coding downstream 70083 11675313 ~ 11675695 (+)
G62932 NA non-coding downstream 257403 11862633 ~ 11863683 (+)
G62967 NA non-coding downstream 307620 11912850 ~ 11913106 (+)
c4h4orf48 c7h4orf48 other upstream 927304 10657357 ~ 10663411 (+)
trnak-cuu_19 NA other upstream 1095245 10495398 ~ 10495470 (+)
trnak-cuu_18 NA other upstream 1098846 10491797 ~ 10491869 (+)
trnak-cuu_17 NA other upstream 1100065 10490578 ~ 10490650 (+)
trnak-cuu_16 NA other upstream 1101279 10489365 ~ 10489436 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other downstream 39671 11644901 ~ 11705336 (+)
si:dkey-112a7.4 LOC108268066 other downstream 687261 12292491 ~ 12295133 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 1601427 13206657 ~ 13219859 (+)
slc16a13 slc16a13 other downstream 1670232 13275462 ~ 13285834 (+)
G63903 NA other downstream 1813147 13418377 ~ 13418696 (+)

Expression


Co-expression Network