G62549


Basic Information

Item Value
gene id G62549
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11177029 ~ 11193851 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU74139
tgacaaactgctcaagtttatttatttcagcattttttaaaaattagattaGAGGTCTCATGTCTGTTATTCGTGATGCCATATTTTAATGGGTCCTGGCATACACGTGACAAATGTGTTTTCATCACCAATGAACTTAAGGCATCTGGATCCAGGAAAGGGATTATTTATgttacaaaacacaaatatactgAAATCTTAAAAGTGATTTTTAGACTGTGTTGAATGGCCGTTGTATTTTGTAGGCTAGACAAATGTAATCCAGCTGTGCATTTTAAATGGAATATGGACGACAACCAGCAGCAGTTCCTCAAGAAAATCACGTGAAAGGTGACTCGACCAGAtggacattttttcccctcactgcTGGCATTTTTGCTTCTCTGTCTCAGTGAGGGAGAAGGCAGGAGGCTAAAATGGCGGCTTTGTGGGATTTTGCTGCAGTATGGTGAAACACTGCGGCCTGCTGGATAAAATCTTTTACTCCAAGTCCATCAGAAACCTCCTCCTACATGCAGTACACATGATGGTTGGATAAAGTCACGTGGAAATCTCTTAGCAAGGTTACATATTATAGTTATAAATTATCTTTCAAATATCTCactttcatttaataaaaacgTTAgtgacaataaaatattaaacttgaCTAACAATGGGAGACAAACAGCTTTCAgttgtttatttggttttattctttaataacatttttcctTTAGtcacttttttattctttgtacaTTCGGCATACtcagaaaaaataatcaaaaagcaaataggaatttctctttttcaaactaaaaaaaaaaaaaaaaaagaagttaaaacatcattaaaacaTGTATCATTCCTCTCGTCTATAACGGTTAGTTTTCTCCCTTATCTGAATCTTGGAGTACAACACTAAAGAATTGAGAGGACTACAGACTCCCAACAGGAGAACACAGGGAGGGACAGGGAGACGCAAGGATGGAGGCAGCAGTAGGACGGGGAGAGACGAGACGTGTTAAACACCTGTTATCCTTCATAACAGCACCTTTCTAGAGTTAACACCGGACAGATACGCAGTAGTCAGCCATTCAGTGCAGAAGGGTCTGGAAGGGTGAGGCCGCTGCCCAAACACACCACAATTAGCCCGACTCGATGGCCAAAACGATGCTTAGGGGGATATTTTGGTCAACCAAAGTTAATTAAAAGTctcagaatgaataaaataattattttataggGAACTACTTGGCAAGTTGACTGCCACAGCTGACTCCAATtagaatttataaataaaaaataatcaagggCTTAAAAGAACAAAAGATGTGAGAAAatgatgcattaaaaataatcaccCTGCTGACGGACTAGCCTTGTCCATGTGTGAGAATGTATGATTACGAGGAAATGAATCGGCGCAAGCCCTTGATACAAATCTGTTTAAGACCAGAGAAACAGTAATCAactgcaaaatcacaaaaaaagggaaaagattTCTACAACACAAAAATggaactaataataataataaaaaaaaaatgtcctgaaaGTCCTGAAAGAAGGATGTACAGCAGATGTGACCGAATGTGTGAAACGCTACCAAAGTGTATGCATATGAAACAATGAAGATTTTCAGGATTGGAACTTTTGCTTCATAGTTTGGCCTCAGTCGGCAAGAAAGGGCATCCATCTTCCTCctagtaccacacacacacgcttgtatttgcgctctctctctctctctctctctctctctctctctctctctctcacactctcagcGTCGTCTGTCCCTGGAGGGGTTGCTGTGGCTTCGTGAGCGTCTGCTGCCCCCCGCTGGCTTGGAGTCGCTGCCTCGGCCTCTGTTGctgtctctccttttctctccctccttctctctacCCCGTTCccgctccctctctctttccctctccctctctttgtcCTTCTCTCCTTCAGCTGGACGGCTTGAGCCTGCTCCACTGCTCGCCGtgttccctccatctctctctcggCCTCGtgctctctccttcctctcctcctcacgCTTcttgtcctcctcctcctgcagctccttcctcctcttctcccgCTCCTTCATCCTCTCCGCTCGTTCCAGGCTCTTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74139 True 2119 lncRNA 0.42 2 11177029 11193851

Neighbor

gene id symbol gene type direction distance location
mmp14a mmp14,mmp14a,LOC107691938,LOC107753930 coding upstream 5689 11159921 ~ 11171340 (+)
LOC113540324 NA coding upstream 39603 11130175 ~ 11137426 (+)
LOC113539896 LOC108261535 coding upstream 65935 11090981 ~ 11111094 (+)
LOC113540335 LOC108267929,LOC108261535 coding upstream 113501 10989215 ~ 11063528 (+)
LOC117596976 LOC108267929 coding upstream 188463 10964062 ~ 10988566 (+)
dhrs4 dhrs4,dhrs1,LOC103023174,LOC107753983,LOC108440044,LOC107742330,LOC107563424 coding downstream 46823 11240674 ~ 11244577 (+)
cideb cideb,LOC108440045 coding downstream 62087 11255938 ~ 11258662 (+)
si:dkey-183c6.8 LOC108267925,LOC108434846 coding downstream 189583 11383434 ~ 11400606 (+)
LOC113539902 LOC108267738,LOC108267739,LOC108267932,LOC108267740,LOC108267931,LOC108261673,LOC108267937,LOC108267938 coding downstream 246237 11440088 ~ 11445185 (+)
LOC117596977 LOC108267738,LOC108267937,LOC108267739,LOC108267932,LOC108267931,LOC108261673 coding downstream 260079 11453930 ~ 11462747 (+)
LOC113540371 NA non-coding upstream 154233 11020133 ~ 11022796 (+)
G62416 NA non-coding upstream 266887 10907025 ~ 10910142 (+)
G62373 NA non-coding upstream 312168 10864655 ~ 10864861 (+)
LOC117596985 NA non-coding upstream 360477 10815750 ~ 10816552 (+)
trnak-cuu_20 NA non-coding upstream 645501 10531456 ~ 10531528 (+)
G62554 NA non-coding downstream 21304 11215155 ~ 11215743 (+)
G62572 LOC108261673,LOC108267931,LOC108267740,LOC108267738,LOC108267932,LOC108267935,LOC108267938 non-coding downstream 81588 11275439 ~ 11366783 (+)
G62585 LOC108267738,LOC108267739,LOC108267932,LOC108267937,LOC108267938,LOC108267241,LOC108267941 non-coding downstream 126246 11320097 ~ 11360515 (+)
LOC117596981 NA non-coding downstream 128619 11322470 ~ 11325752 (+)
LOC113540368 NA non-coding downstream 224156 11418007 ~ 11421178 (+)
c4h4orf48 c7h4orf48 other upstream 513618 10657357 ~ 10663411 (+)
trnak-cuu_19 NA other upstream 681559 10495398 ~ 10495470 (+)
trnak-cuu_18 NA other upstream 685160 10491797 ~ 10491869 (+)
trnak-cuu_17 NA other upstream 686379 10490578 ~ 10490650 (+)
trnak-cuu_16 NA other upstream 687593 10489365 ~ 10489436 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other downstream 396864 11590715 ~ 11605230 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other downstream 451050 11644901 ~ 11705336 (+)
si:dkey-112a7.4 LOC108268066 other downstream 1098640 12292491 ~ 12295133 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 2012806 13206657 ~ 13219859 (+)
slc16a13 slc16a13 other downstream 2081611 13275462 ~ 13285834 (+)

Expression


Co-expression Network