G62572 (LOC108261673,LOC108267931,LOC108267740,LOC108267738,LOC108267932,LOC108267935,LOC108267938)


Basic Information

Item Value
gene id G62572
gene name LOC108261673,LOC108267931,LOC108267740,LOC108267738,LOC108267932,LOC108267935,LOC108267938
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11275439 ~ 11366783 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU74174
cctttctctctctgctctcctccTCTATAGGAACAGTGTTGTGATTCTTGTGATCTCCTTCAGTGcagaactgacacacacacgtctgatcATCTCTACAGAACAGCTCCAGAGCTCTCTCATGTTTCTGGCATATGTagtcctccaggttctccacaGGGTTTATTAGTTTGTGTTTCTTGAGCTTTGGAATGTTATTATGTGGCTCTAAATGAGTTTTACAGAAAGCTGCACAACAATCCAGACAGGATTTCAGGGCCTTCAGCTTCTCTCCAGTGCAGGCGTCACAAAGAACCTCGGGTTTATCAGGACCACTTTTCTTCTTGAAGTGATCTGCAACCTCTCTCAGTGTTGTATTAATCTTCAGTTCAGGTCTCTTGGTGAATTTGTCTTTACATAATGGACAGTGACAGTGTTGACTCTTCTCCCAGCACTGTGTAAGGCAGCTTTTGCAGAAGTTGTGTCCACATGGAGTGGTGACTGGATCAGTGAACACATCCAGACAGATCAAACACAGCAGCTGCTCTTCAGACAGGAGACTGCTGGAGTCATGAGAAACTAGCATTGATGGAAAAAAAGTTACACATTGTTTATAAATAGTGTAGAAATACTGTAATTTGTTTCAGCCTTGTCTCTATACAGTACACTGCATCTGTACTGCAGGTGTGAAAATCACAGAGCAGAATTTCTACATGTTTTCCTGTACTGATACGAAAAGGCTTTTTATTCTAAACTCACTCACAGCTGAAGTCTAAAAGTATTTGTTGGGGTGTCACtttgtgtaaaaacatttttgtagaatacattcattaattttacagttaaggGTATTTACAAGTGTACTGTAGCTcttacataagaaataaaacacagaacaatgtGCAATAAAAGTAATCGATGACAGGGTTGATTATTCATACATAAAACTGCACATGCttgagtgatttattcctcttatacagcaTCACTGCAACGCTCcaacaataatacatttttctttaaaaaaattacactttttcaTTCTgtagtcattttaaatgttg

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM39-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74174 True 1043 lncRNA 0.39 2 11275439 11366783

Neighbor

gene id symbol gene type direction distance location
cideb cideb,LOC108440045 coding upstream 16777 11255938 ~ 11258662 (+)
dhrs4 dhrs4,dhrs1,LOC103023174,LOC107753983,LOC108440044,LOC107742330,LOC107563424 coding upstream 30862 11240674 ~ 11244577 (+)
ajuba ajuba coding upstream 83445 11183735 ~ 11191994 (+)
mmp14a mmp14,mmp14a,LOC107691938,LOC107753930 coding upstream 104099 11159921 ~ 11171340 (+)
LOC113540324 NA coding upstream 138013 11130175 ~ 11137426 (+)
si:dkey-183c6.8 LOC108267925,LOC108434846 coding downstream 16651 11383434 ~ 11400606 (+)
LOC113539902 LOC108267738,LOC108267739,LOC108267932,LOC108267740,LOC108267931,LOC108261673,LOC108267937,LOC108267938 coding downstream 73305 11440088 ~ 11445185 (+)
LOC117596977 LOC108267738,LOC108267937,LOC108267739,LOC108267932,LOC108267931,LOC108261673 coding downstream 87147 11453930 ~ 11462747 (+)
LOC117596971 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267740,LOC108267937,LOC108267938,LOC108261673 coding downstream 101167 11467950 ~ 11582422 (+)
vbp1 vbp1,LOC107588140,LOC107668907,LOC107562614,LOC107742288,LOC107691952 coding downstream 246985 11613768 ~ 11619677 (+)
G62554 NA non-coding upstream 59696 11215155 ~ 11215743 (+)
G62549 NA non-coding upstream 81588 11177029 ~ 11193851 (+)
LOC117596983 NA non-coding upstream 91705 11182770 ~ 11183734 (+)
LOC113540371 NA non-coding upstream 252643 11020133 ~ 11022796 (+)
G62416 NA non-coding upstream 365297 10907025 ~ 10910142 (+)
LOC113540368 NA non-coding downstream 51224 11418007 ~ 11421178 (+)
G62618 NA non-coding downstream 70746 11437529 ~ 11437855 (+)
LOC117596988 NA non-coding downstream 96300 11463083 ~ 11464606 (+)
G62639 NA non-coding downstream 241973 11608756 ~ 11609269 (+)
G62640 NA non-coding downstream 244053 11610836 ~ 11611057 (+)
c4h4orf48 c7h4orf48 other upstream 612028 10657357 ~ 10663411 (+)
trnak-cuu_19 NA other upstream 779969 10495398 ~ 10495470 (+)
trnak-cuu_18 NA other upstream 783570 10491797 ~ 10491869 (+)
trnak-cuu_17 NA other upstream 784789 10490578 ~ 10490650 (+)
trnak-cuu_16 NA other upstream 786003 10489365 ~ 10489436 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other downstream 223932 11590715 ~ 11605230 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other downstream 278118 11644901 ~ 11705336 (+)
si:dkey-112a7.4 LOC108268066 other downstream 925708 12292491 ~ 12295133 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 1839874 13206657 ~ 13219859 (+)
slc16a13 slc16a13 other downstream 1908679 13275462 ~ 13285834 (+)

Expression


Co-expression Network