G62639


Basic Information

Item Value
gene id G62639
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11608756 ~ 11609269 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU74255
CCGTTTTATGACTGCTGTCAAAAGACATCATGAGGAGATAACACTGACTATTGCTTCCAGTAAGAGCAGTAAGTCCAGTATTAACTTTACAGGACCACGCACTGTGAGAGCATAGCACAGGACATAAACatgtgaataaaacacaataaattttAGCAGAAACCAGGCCACATGTTCACCATTGTAATGTGgggtttgggttttgtttgtgtttcttgttcattgctctcatgtcttttattttggagtttagTCATGGTTCCTGTCTAGTCATGTGTTCCTTGTCCCTCCTGTGATCTTGTCATGTGTTACCCTTGTCtttgtgtcatgttctgattggttccttggtttcatgtgtcttgttctgattggttgattaagTCATGTGTCCTTGATTGTTTGGTGTATATATAGCCCTCATGTAGCCATTGTCTCTTGTCGTGTATTGATTTTGTAACCTGCAGTCTGTTGTAGTCAAGTTTGTTCATGCCAAGCCAAGTCTGTCCAAGTTAAg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74255 True 514 lncRNA 0.40 1 11608756 11609269

Neighbor

gene id symbol gene type direction distance location
LOC117596971 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267740,LOC108267937,LOC108267938,LOC108261673 coding upstream 26334 11467950 ~ 11582422 (+)
LOC117596977 LOC108267738,LOC108267937,LOC108267739,LOC108267932,LOC108267931,LOC108261673 coding upstream 146009 11453930 ~ 11462747 (+)
LOC113539902 LOC108267738,LOC108267739,LOC108267932,LOC108267740,LOC108267931,LOC108261673,LOC108267937,LOC108267938 coding upstream 163571 11440088 ~ 11445185 (+)
si:dkey-183c6.8 LOC108267925,LOC108434846 coding upstream 208150 11383434 ~ 11400606 (+)
cideb cideb,LOC108440045 coding upstream 350094 11255938 ~ 11258662 (+)
vbp1 vbp1,LOC107588140,LOC107668907,LOC107562614,LOC107742288,LOC107691952 coding downstream 4499 11613768 ~ 11619677 (+)
zgc:162171 LOC108267158 coding downstream 22707 11631976 ~ 11637570 (+)
zgc:92429 zgc:92429,LOC108267498,LOC103044742,LOC108434854 coding downstream 98190 11707459 ~ 11716739 (+)
gpr185b gpr185b,LOC108267436,LOC107669001,LOC107562838,LOC107588216,LOC107742332,LOC107691958 coding downstream 209497 11818766 ~ 11824148 (+)
si:dkey-171c9.3 LOC108268329 coding downstream 476910 12086179 ~ 12093053 (+)
LOC117596988 NA non-coding upstream 144150 11463083 ~ 11464606 (+)
G62618 NA non-coding upstream 170901 11437529 ~ 11437855 (+)
LOC113540368 NA non-coding upstream 187578 11418007 ~ 11421178 (+)
G62572 LOC108261673,LOC108267931,LOC108267740,LOC108267738,LOC108267932,LOC108267935,LOC108267938 non-coding upstream 241973 11275439 ~ 11366783 (+)
G62640 NA non-coding downstream 1567 11610836 ~ 11611057 (+)
G62654 NA non-coding downstream 66044 11675313 ~ 11675695 (+)
G62932 NA non-coding downstream 253364 11862633 ~ 11863683 (+)
G62967 NA non-coding downstream 303581 11912850 ~ 11913106 (+)
G62983 NA non-coding downstream 325560 11934829 ~ 11937759 (+)
LOC117596972 LOC108267738,LOC108267932,LOC108267931,LOC108267739,LOC108267937,LOC108261673,LOC108267938,LOC108267933,LOC108267935,LOC108267740 other upstream 3526 11590715 ~ 11605230 (+)
c4h4orf48 c7h4orf48 other upstream 945345 10657357 ~ 10663411 (+)
trnak-cuu_19 NA other upstream 1113286 10495398 ~ 10495470 (+)
trnak-cuu_18 NA other upstream 1116887 10491797 ~ 10491869 (+)
trnak-cuu_17 NA other upstream 1118106 10490578 ~ 10490650 (+)
si:ch211-200p22.4 LOC108267499,LOC108434851 other downstream 35632 11644901 ~ 11705336 (+)
si:dkey-112a7.4 LOC108268066 other downstream 683222 12292491 ~ 12295133 (+)
tmem88b tmem88,bcl6b,LOC108267673 other downstream 1597388 13206657 ~ 13219859 (+)
slc16a13 slc16a13 other downstream 1666193 13275462 ~ 13285834 (+)
G63903 NA other downstream 1809108 13418377 ~ 13418696 (+)

Expression


Co-expression Network