LOC113538166 (LOC108267929,LOC108261535,LOC108267954,LOC103358416,LOC107753927)



Basic Information


Item Value
gene id LOC113538166
gene name LOC108267929,LOC108261535,LOC108267954,LOC103358416,LOC107753927
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11286449 ~ 11313616 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>TU74365
GGCAGAAGTTCCCTTCACACACCATCAGGCTGGTAATGTGGTCACAGGAGAGATGGTGGAGGAGCTGATTCTCGCTGGTGCCGACATCATTAAAGTGGGCATCGGTCCAGGCTCAGTGTGTACAACCGTAAGAAGACAGGTGTGGGCTACCCTCAGCTGAGTGCTGTAATTGAGTGTGCTGATGCTGCACATGGCCTGGGTGGACACATCATCTCTGATGGAGGATGTACCTGTCCTGGTGATGTCTCTAAGGCTTTTGGTGCGGGAGCGGACTTCGTGATGCTGGGTGGAATGTTGGCGGGTCACTCTGAGAGCGGAGGTGAGACCATTGAGAAAAACGGCAAAAAGTACAAACTGTTCTACGGCATCAGCTCTGATACGGCCATGAAGAAGCACGCAGGAGGAGTAGCAGAGTACAGGTGAGAGAAAGACTGGCAGCATACTGAGtacaggagaaaaaaatcaaaatgtaaagTCATTACACTGTGTTTTAACATGTGTAATGTTATCAGAAAGGATATCAGGCAGCATGCAGTAAAGATATATTCTGTAATTCTATAATTCCCGTTGTCTTGGACATCAGTCCCTGTAAATGATTTTCAGAGAGAG
>XM_034303257.1
CGTTAGAAAAAAGGGCGTGGCTCACAAACGAACGAAAACGAAAGTGAGAtacaaacaactgaaaatgtGAGCTGTGAGATGAAGTGTCTTTATTTTCCGCCTATTCTTACtgagaaaatataaacattaaaaatgaggatgtttttatttgtgactCTCCTGATCCTCTACGGCTTTATGGAATCTCAATCAGagcgaTTAAAGATTTTTGGTCCAGAAGGTCCTCTTGATGCTGTAGCTGGTGAAGATCTGGTTCTGCCATGTTTTATCAAACCCAGCACGAGCGCTGTGGACATGACAGTGGAGTGGATGAGACTAGAGGAAGTGGCTTCATTAGTGCATCTCTATAAAgatcagaaagagaaaaatgaaaagcaggCTCAGTCCTACAGAGGAAGAACATCACTGTTTAAAGAGGAGCTACAGAAAGGCAACGCTTCACTCAAACTCTCAGCTCTCCGAGTCTCTGATGAAGGAGAATATAAGTGTCTCATTGAAGACAAATCCTGGTatgatgacatcactgttcACATCACTGTTAAGGTTCTGGGAAGCCACCCAGTGATCACGATGGAGAGTTATGATAACTCAGGAGGGATTAATCTAGTGTGTGAGTCCAGAGGCTGGAACCCTGAACCTGATGTTCTGTGGCTGGACAGAGAAGGAGCCACTCTGCCTGCTGaagatacacagacacacagagacactgagggCTTCAGTGTGAAACGCCACATCACTGTTTATGATTATAGCGACTCCAACAGATTTTACTGCAGACTtcaacaaaaacatcacatgatGGAGGCAGAGGTTATCATTAATAGTAAAGTCTTTGGTGTTTGGAAGTGGCTTGTCGGCATTTCAGTTTCAGCATGTGTTATTGCTGTCGGATTGATAGTAACTGCGGTTATCTGTTACAAGAAagCCTCAGAGCTTCAGAAGGAGAAGAGATACGCAGAGTTGATAAAGAAGAAGTTGTTTGCAGtGGATGTGACTCTGGATCCTGATACAGCAAATCCTCATCTCATCCTGTCTGCTGATGGAAAACAAGTGACATGTGGAGACACACGACAGGATCTCCCTGATACACCACAGAGGTTTACTTCTTATTCCTGTGTTGTGGGAAAGGAGAGTTTCTCCTCAGGGAGATTTTATTATGAGGTGCAGGTCAGAGGGAAAACTGCATGGACATTAGGAGTCGTGAGAGAGTCCATTAACAGGAAGAGGTTGTGGATTACACCGAATCCTCAGACTGGATTCTGGACTGTGGCTCTGAGGAATGAGAATCAGTACTTGGCTCTTGCTGGTCCCCTTGTTCGCCTCACACTGCGAGAGAAGGTGGAGAAGGTGGGGGTGTTTGTGGATTATGAGGACGGTCTGGTCTCCTTTTATGATGTGAAGTCCAGCTCTCATATCTACTCTTTCACTGCTCAGTCTTTCACTGAGAAACTCTATCCATACTTCAATCCTTGTTTAAATAAAGGAAGTAAAAATTCAGCACCACTGATCATCTCTCctgtatttaacactgaatgaaTTTTCACCTCACACATTTAATCATCTATTAAATGgtgagaataaaaagaaatattttacttttctgGTGAATTTTAGAAATACATATTCCCTTTTAAAGTGctgtacagtttattttaatacctggggtttgtttttaattttaatcctacagtctgtttttttacacattatgatTGTGGAACTTTGTCATtacaaatcaaatattaataaagatcatttacAGTTCACACTGAGTTTTACTGCAGAATTGAATCTGATCAATAAAATGGATTAAGTTCAGCTGCTGATGTTTGTTTAGATACAACCGAACAAAACTGTTTCTCCTTCAAActccatcaaacacaaatacaatcaaattcagcttttatttagaaataaa
>XM_034303258.1
GAGCGGAGGTGAGACCATTGAGAAAAACGGCAAAAAGTACAAACTGTTCTACGGCATCAGCTCTGATACGGCCATGAAGAAGCACGCAGGAGGAGTAGCAGAGTACAGTGTCTGGCGTAAAGAGCACTTCGATTAACATGAGTGTGCACTGAACACAGCGTTACAGCAGTCTGGTGTAAACGGGGATTAAGAGGAGCTCTGTTTGAGATTtatgtacagatgaggagatgagaaagctggacagactgaaggactaaagctctgctgcatcactctctttaggaaGACATGAAGCAAAAATCTCACTGACatcgaatggcattggatgtttttatttgtgactCTCCTGATCCTCTACGGCTTTATGGAATCTCAATCAGagcgaTTAAAGATTTTTGGTCCAGAAGGTCCTCTTGATGCTGTAGCTGGTGAAGATCTGGTTCTGCCATGTTTTATCAAACCCAGCACGAGCGCTGTGGACATGACAGTGGAGTGGATGAGACTAGAGGAAGTGGCTTCATTAGTGCATCTCTATAAAgatcagaaagagaaaaatgaaaagcaggCTCAGTCCTACAGAGGAAGAACATCACTGTTTAAAGAGGAGCTACAGAAAGGCAACGCTTCACTCAAACTCTCAGCTCTCCGAGTCTCTGATGAAGGAGAATATAAGTGTCTCATTGAAGACAAATCCTGGTatgatgacatcactgttcACATCACTGTTAAGGTTCTGGGAAGCCACCCAGTGATCACGATGGAGAGTTATGATAACTCAGGAGGGATTAATCTAGTGTGTGAGTCCAGAGGCTGGAACCCTGAACCTGATGTTCTGTGGCTGGACAGAGAAGGAGCCACTCTGCCTGCTGaagatacacagacacacagagacactgagggCTTCAGTGTGAAACGCCACATCACTGTTTATGATTATAGCGACTCCAACAGATTTTACTGCAGACTtcaacaaaaacatcacatgatGGAGGCAGAGGTTATCATTAATAGTAAAGTCTTTGGTGTTTGGAAGTGGCTTGTCGGCATTTCAGTTTCAGCATGTGTTATTGCTGTCGGATTGATAGTAACTGCGGTTATCTGTTACAAGAAagCCTCAGAGCTTCAGAAGGAGAAGAGATACGCAGAGTTGATAAAGAAGAAGTTGTTTGCAGtGGATGTGACTCTGGATCCTGATACAGCAAATCCTCATCTCATCCTGTCTGCTGATGGAAAACAAGTGACATGTGGAGACACACGACAGGATCTCCCTGATACACCACAGAGGTTTACTTCTTATTCCTGTGTTGTGGGAAAGGAGAGTTTCTCCTCAGGGAGATTTTATTATGAGGTGCAGGTCAGAGGGAAAACTGCATGGACATTAGGAGTCGTGAGAGAGTCCATTAACAGGAAGAGGTTGTGGATTACACCGAATCCTCAGACTGGATTCTGGACTGTGGCTCTGAGGAATGAGAATCAGTACTTGGCTCTTGCTGGTCCCCTTGTTCGCCTCACACTGCGAGAGAAGGTGGAGAAGGTGGGGGTGTTTGTGGATTATGAGGACGGTCTGGTCTCCTTTTATGATGTGAAGTCCAGCTCTCATATCTACTCTTTCACTGCTCAGTCTTTCACTGAGAAACTCTATCCATACTTCAATCCTTGTTTAAATAAAGGAAGTAAAAATTCAGCACCACTGATCATCTCTCctgtatttaacactgaatgaaTTTTCACCTCACACATTTAATCATCTATTAAATGgtgagaataaaaagaaatattttacttttctgGTGAATTTTAGAAATACATATTCCCTTTTAAAGTGctgtacagtttattttaatacctggggtttgtttttaattttaatcctacagtctgtttttttacacattatgatTGTGGAACTTTGTCATtacaaatcaaatattaataaagatcatttacAGTTCACACTGAGTTTTACTGCAGAATTGAATCTGATCAATAAAATGGATTAAGTTCAGCTGCTGATGTTTGTTTAGATACAACCGAACAAAACTGTTTCTCCTTCAAActccatcaaacacaaatacaatcaaattcagcttttatttagaaataaa
>XM_034303259.1
TGAGAtacaaacaactgaaaatggatgtttttatttgtgactCTCCTGATCCTCTACGGCTTTATGGAATCTCAATCAGagcgaTTAAAGATTTTTGGTCCAGAAGGTCCTCTTGATGCTGTAGCTGGTGAAGATCTGGTTCTGCCATGTTTTATCAAACCCAGCACGAGCGCTGTGGACATGACAGTGGAGTGGATGAGACTAGAGGAAGTGGCTTCATTAGTGCATCTCTATAAAgatcagaaagagaaaaatgaaaagcaggCTCAGTCCTACAGAGGAAGAACATCACTGTTTAAAGAGGAGCTACAGAAAGGCAACGCTTCACTCAAACTCTCAGCTCTCCGAGTCTCTGATGAAGGAGAATATAAGTGTCTCATTGAAGACAAATCCTGGTatgatgacatcactgttcACATCACTGTTAAGGTTCTGGGAAGCCACCCAGTGATCACGATGGAGAGTTATGATAACTCAGGAGGGATTAATCTAGTGTGTGAGTCCAGAGGCTGGAACCCTGAACCTGATGTTCTGTGGCTGGACAGAGAAGGAGCCACTCTGCCTGCTGaagatacacagacacacagagacactgagggCTTCAGTGTGAAACGCCACATCACTGTTTATGATTATAGCGACTCCAACAGATTTTACTGCAGACTtcaacaaaaacatcacatgatGGAGGCAGAGGTTATCATTAATAGTAAAGTCTTTGGTGTTTGGAAGTGGCTTGTCGGCATTTCAGTTTCAGCATGTGTTATTGCTGTCGGATTGATAGTAACTGCGGTTATCTGTTACAAGAAagCCTCAGAGCTTCAGAAGGAGAAGAGATACGCAGAGTTGATAAAGAAGAAGTTGTTTGCAGtGGATGTGACTCTGGATCCTGATACAGCAAATCCTCATCTCATCCTGTCTGCTGATGGAAAACAAGTGACATGTGGAGACACACGACAGGATCTCCCTGATACACCACAGAGGTTTACTTCTTATTCCTGTGTTGTGGGAAAGGAGAGTTTCTCCTCAGGGAGATTTTATTATGAGGTGCAGGTCAGAGGGAAAACTGCATGGACATTAGGAGTCGTGAGAGAGTCCATTAACAGGAAGAGGTTGTGGATTACACCGAATCCTCAGACTGGATTCTGGACTGTGGCTCTGAGGAATGAGAATCAGTACTTGGCTCTTGCTGGTCCCCTTGTTCGCCTCACACTGCGAGAGAAGGTGGAGAAGGTGGGGGTGTTTGTGGATTATGAGGACGGTCTGGTCTCCTTTTATGATGTGAAGTCCAGCTCTCATATCTACTCTTTCACTGCTCAGTCTTTCACTGAGAAACTCTATCCATACTTCAATCCTTGTTTAAATAAAGGAAGTAAAAATTCAGCACCACTGATCATCTCTCctgtatttaacactgaatgaaTTTTCACCTCACACATTTAATCATCTATTAAATGgtgagaataaaaagaaatattttacttttctgGTGAATTTTAGAAATACATATTCCCTTTTAAAGTGctgtacagtttattttaatacctggggtttgtttttaattttaatcctacagtctgtttttttacacattatgatTGTGGAACTTTGTCATtacaaatcaaatattaataaagatcatttacAGTTCACACTGAGTTTTACTGCAGAATTGAATCTGATCAATAAAATGGATTAAGTTCAGCTGCTGATGTTTGTTTAGATACAACCGAACAAAACTGTTTCTCCTTCAAActccatcaaacacaaatacaatcaaattcagcttttatttagaaataaa

Function


NR:

description
PREDICTED: butyrophilin subfamily 1 member A1-like isoform X11

GO: NA

KEGG:

id description
K06712 BTN, CD277; butyrophilin

RNA


RNA id representative length rna type GC content exon number start site end site
TU74365 False 609 lncRNA 0.48 5 11311573 11313616
XM_034303257.1 False 1918 mRNA 0.40 8 11286449 11310793
XM_034303258.1 True 2105 mRNA 0.42 9 11286449 11311870
XM_034303259.1 False 1804 mRNA 0.41 8 11286449 11310749

Neighbor


gene id symbol gene type direction distance location
homezb LOC108267927 coding downstream 22359 11258688 ~ 11264090 (-)
tinf2 LOC108267930 coding downstream 23383 11244771 ~ 11263066 (-)
LOC113540349 LOC108267946 coding downstream 46980 11233048 ~ 11239469 (-)
efs LOC108267924 coding downstream 55252 11217786 ~ 11231197 (-)
LOC113540752 NA coding downstream 72027 11214322 ~ 11214422 (-)
LOC117597109 LOC108267929,LOC108261535 coding upstream 6419 11320035 ~ 11341183 (-)
LOC113538167 gmpr2,LOC108267954,LOC107753927,LOC107668803,LOC101077150 coding upstream 29090 11342706 ~ 11347588 (-)
ccdc166 NA coding upstream 64213 11377829 ~ 11381919 (-)
syt4 syt4,LOC107691948,LOC107562593,LOC107742284,LOC107668880 coding upstream 112682 11426298 ~ 11432252 (-)
LOC113540344 LOC108267931,LOC108267738,LOC108267932,LOC108267740,LOC108267739,LOC108267937 coding upstream 196115 11509731 ~ 11519651 (-)
LOC117596980 NA non-coding downstream 203437 11080531 ~ 11083012 (-)
G62504 LOC108267929,LOC108261535 non-coding downstream 211746 11042345 ~ 11074703 (-)
G62469 LOC108267929 non-coding downstream 332705 10926840 ~ 10953744 (-)
G62183 NA non-coding downstream 714089 10572155 ~ 10572360 (-)
G62167 NA non-coding downstream 752027 10534073 ~ 10534422 (-)
G62754 NA non-coding upstream 7754 11321370 ~ 11361429 (-)
LOC117596984 NA non-coding upstream 37081 11350697 ~ 11358554 (-)
G62735 LOC108261673,LOC108267931,LOC108267938,LOC108267738,LOC108267739,LOC108267740,LOC108267935,LOC108267932 non-coding upstream 51639 11365255 ~ 11366181 (-)
G62734 LOC108267738,LOC108267739,LOC108267931,LOC108267241,LOC108267938,LOC108261673,LOC108267740,LOC108267935 non-coding upstream 127501 11441117 ~ 11471047 (-)
G62791 NA non-coding upstream 137822 11451438 ~ 11547288 (-)
mrpl52 mrpl52 other downstream 104080 11177685 ~ 11182369 (-)
nedd8 nedd8,LOC107588156,LOC108440049,LOC107562413,LOC103040682,LOC103358415,LOC106608856 other downstream 376238 10907025 ~ 10910211 (-)
svep1 svep1 other downstream 422951 10775252 ~ 10863498 (-)
poln poln,LOC107563414 other downstream 538803 10693257 ~ 10747646 (-)
gba2 gba2,LOC107749818,LOC107741462 other downstream 724443 10538245 ~ 10562006 (-)
si:dkey-183c6.7 LOC108267942 other upstream 88411 11402027 ~ 11415897 (-)
LOC117597110 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267938,LOC108261673,LOC108267241,LOC108267937,LOC108267740,LOC108267935 other upstream 211210 11524826 ~ 11535243 (-)
htr2cl1 LOC108267122,LOC108434824 other upstream 549009 11862625 ~ 11966903 (-)
si:dkey-165a24.9 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC105903083,LOC107572570,LOC107753961,LOC107659726,LOC107588125 other upstream 933346 12246962 ~ 12249754 (-)
LOC113539775 NA other upstream 958602 12272218 ~ 12277669 (-)

Expression



Co-expression Network