LOC113540328 (LOC108267738,LOC108267931,LOC108267739,LOC108267932,LOC108267933,LOC108267740,LOC108261673,LOC108267241,LOC108267937,LOC108267929)


Basic Information

Item Value
gene id LOC113540328
gene name LOC108267738,LOC108267931,LOC108267739,LOC108267932,LOC108267933,LOC108267740,LOC108261673,LOC108267241,LOC108267937,LOC108267929
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11266384 ~ 11360044 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU74367
GCTGGTCCCGCTGTCCCcctcacactgagagagaaggtGGAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCTGGTCTCCTTTTATGATGTGAAGTCCAGCTCTCATATCTACTCTTTCACTGGTCAGTCTTTCACTGAGAAACTCTATCCATTCTTCAGTCCTGGTTTAAATAAAGGAGGTAAAAATTCAGCGCCACTGATCATCTCTCctgtatttaacactgaatgaaTTTTCACCTCACAGATTTAATCATCTATTAAATGgtgagaataaaaagaaatattttacttttttggtgAATTTTAGAAATACATATTCCCTTTTAAAGTGctgtacagtttattttaatacctggggtttgtttttaatcctaCAGTctgttttttacacattatgatTGTGGAACTTTGTCATtacaaatcaaatattaataaagatcatttacAGTTCACACTGAGTTTTACTGCAGAATTGAATCTGATCAATAAAATGGATTAAGTTCAGCTGCTGATGTCTGTGTAGATACAACCGAACAAAACTGTTTCTCCTTCAAActccatcaaacacaaatacaatcaaattcagcttttatttagaaataaaaatgtc
>XM_026936766.2
GACTAAAGTGAAAGGGAAAAGCAGTTAGATCACATCGAAAGGAAActcttatttttacattaatttctGAAATTAACTGCAGGATATTCACTGACTCTGAGATATAAATACAGACCATTCTCACTCCCTGAAAAGAGGCAAGTGAAATAAAGGTTAAAAACACAGGAGGAAGTAAATGGCTGAATCTTCATCACAAACAGAAGGCAGAAGAAGGAGAAGCAAGGATGAACCAGGTTCATTTGCTCGTGACTCCAGCAGTCTCCTGTCTGAAGAGCAGCTGCTGTGTTCGATCTGTCTGGATGTGTTCACTGATCCAGTCACCACTCCATGTGGACACAACTTCTGCAAGAGCTGCCTTACACAGTGCTGGGAGAAGAGTCAACACTGTCACTGTCCATTATGTAAAGACAAATTCACCAAGAGACCTGAACTGAAGATTAATACAACACTGAGAGAGGTTGCAGATCACTTCAAGAAGAAAAGTGGTCCTGACAAACCTGAGGTTCTTTGTGATGCCTGCACTGGAGAGAAGTTGAAGGCCCTGAAATCCTGTCTGGATTGTCGTGCATCTTTCTGTACATCCCATTTAGAGTTTCATAATTATGTTCCAAAGCTTAAGAAACACAAACTAATAAACCCtgtggagaacctggaggactACATATGCCAGAAACATGAGAGAGCTCTGGAGCTGTTCTGTAGAGATgatcagacgtgtgtgtgtcagttctgCACTGAAGGAGATCACAAGAATCACAACACTGTTCCTATAGAggaggagagcagagagagaaagACTCAGCTGGggaaaacacagacagatgtgCAGCAGATGATTCAGGACCGAATGAAGAAGATCCAAGAGATCAAACACTCAGTAGAGCtcagtaaaAgaagcacagagaaagagaaatcagACAGTGTTGAAGTCTTCACTGCTCTGATTCGCTCCATTGAGAGAAGTCAGGCTGAGCTGCTCGAGGTGAtggaggagaagcagaaagCAGCAGAGAGGCAGGCTGAAGGACTCATTAAAGAGCTGGAGCAGGAAATCACTGTGCTAAAGAGGAGAGacactgagctggagcagctctcacacactgaggAGCATCTCCACCTCCTACAGATTTACTCCTCCATGTGCAGCCCTCCACACGCCAAGAACTGGACTGAGATCAGTATTAACACTGATCTGAGTGGGGACACTGTGAGGACAGCTCTGTCTCAGCTTCAGCAGACTCTGAATGAGAAACTCACTAAAACACTCGATGACAAGTTAAAGGAAACAGTTTCCAGAGAACTGAAGAGGATTCAGCAGTATGCAGtggATATGACTCTGGATCCTGATACAGCTCATCCCAAACTCATCCTGTCTGCTGATGGAAAACAAGTGACACACGGAGACACACGACAGGATCTCCCTGATACACCACAGagatttactttttattacagTGTTGTGGGAAAGCAGAGTTTCTCCTCAGGGAGATTTTATTATGAGGTGCAGGTCAGAGGGAAAACTAACTGGACATTAGGAGTCGTGAGAGAGAACATTAACAGGAAGAGGTTGTGGATTACACCGAATCCTCAGACTGGATTCTGGACTGTGGCTCTGTGGGGTGAGAATCAGTATGAGGCTTGTGCTGATCCTGATGTCCCcctcacactgagagagaaggtGGAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCTGGTCTCCTTTTATGATGTGGAGTCCAGCTCTCATATCTACTCTTTCACTGCTCAGTCTTTCACTGAGAAACTCTATCCATTCTTCAGTCCTTGTTTAAATAAAGGAGGTAAAAATTCAGCACCACTGATCATCTCTCctgtatttaacactgaatgaaTTTTCACCTCACAGATTTAATCATCTATTAAATGctgagaataaaaagaaatattttacttttttggtgAATTTTAGAAATACATATTCCCTTTTAAAGTGctgtacagtttattttaatacctggggtttgtttttaattttaatcctaCAGTctgttttttacacattatgatTGTGGAACTTTGTCATtacaaatcaaatattaataaagatcatttacAGTTCA
>XM_034303237.1
GACTAAAGTGAAAGGGAAAAGCAGTTAGATCACATCGAAAGGAAActcttatttttacattaatttctGAAATTAACTGCAGGATATTCACTGACTCTGAGATATAAATACAGACCATTCTCACTCCCTGAAAAGAGGCAAGTGAAATAAAGGTTAAAAACACAGGAGGAAGTAAATGGCTGAATCTTCATCACAAACAGAAGGCAGAAGAAGGAGAAGCAAGGATGAACCAGGTTCATTTGCTCGTGACTCCAGCAGTCTCCTGTCTGAAGAGCAGCTGCTGTGTTCGATCTGTCTGGATGTGTTCACTGATCCAGTCACCACTCCATGTGGACACAACTTCTGCAAGAGCTGCCTTACACAGTGCTGGGAGAAGAGTCAACACTGTCACTGTCCATTATGTAAAGACAAATTCACCAAGAGACCTGAACTGAAGATTAATACAACACTGAGAGAGGTTGCAGATCACTTCAAGAAGAAAAGTGGTCCTGACAAACCTGAGGTTCTTTGTGATGCCTGCACTGGAGAGAAGTTGAAGGCCCTGAAATCCTGTCTGGATTGTCGTGCATCTTTCTGTACATCCCATTTAGAGTTTCATAATTATGTTCCAAAGCTTAAGAAACACAAACTAATAAACCCtgtggagaacctggaggactACATATGCCAGAAACATGAGAGAGCTCTGGAGCTGTTCTGTAGAGATgatcagacgtgtgtgtgtcagttctgCACTGAAGGAGATCACAAGAATCACAACACTGTTCCTATAGAggaggagagcagagagagaaagACTCAGCTGGggaaaacacagacagatgtgCAGCAGATGATTCAGGACCGAATGAAGAAGATCCAAGAGATCAAACACTCAGTAGAGCtcagtaaaAgaagcacagagaaagagaaatcagACAGTGTTGAAGTCTTCACTGCTCTGATTCGCTCCATTGAGAGAAGTCAGGCTGAGCTGCTCGAGGTGAtggaggagaagcagaaagCAGCAGAGAGGCAGGCTGAAGGACTCATTAAAGAGCTGGAGCAGGAAATCACTGTGCTAAAGAGGAGAGacactgagctggagcagctctcacacactgaggAGCATCTCCACCTCCTACAGATTTACTCCTCCATGTGCAGCCCTCCACACGCCAAGAACTGGACTGAGATCAGTATTAACACTGATCTGAGTGGGGACACTGTGAGGACAGCTCTGTCTCAGCTTCAGCAGACTCTGAATGAGAAACTCACTAAAACACTCGATGACAAGTTAAAGGAAACAGTTTCCAGAGAACTGAAGAGGATTCAGCAGTATGCAGtggATGTGACTCTGGATCCTGATACAGCTCATCCTCATCTCATGTCATCAAGCAGAGTTTCTTCTCAGGGAGATTTTATAATGAGGTGCAGGTCAGAAGGAAAAGTGAGTGGGAACTCGGAGTCGCAAGAGAGAGCACTGACAGAAAGGGGAGATTCCACTGACTCCTCAGGATGGATTCTGGACTGTGGGACTGAGGAAAGAGAATCAGCACTGGGCTTGTGCTAGTACCACTGATGTCCTcctcacactgagagagaaggtGGGGGTGTTTGTGGGTTATGAGGAGGGTCTGGTCTCCTTTTATTATGTGGAGTCCAGCTCTCATATCTACTCTTTCACTGCTCAGTCTTTCACTGAGAAACTCTATCCATACTTCAGTCCTGAAGTAGATGATAAAAACACAGCACCACTGATCATCTCTCCTGTATTTAagattgaatgattttttttatctcacaTAAAATAGTAAgtttaaaaatggattttaaaaccTATTTCTGGTGCATATTATGaaaacaacagaacaacaaTGTAACAGAATCTGAAATaatcagaaatgtttaaataacaaAAGTTAGGTTCAATAAATCTGAACTTAAAAGATGTGCTAATTgtattttcacttttgtttcAGATATTCAGAAGTGAAATTTC

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM39-like isoform X1

GO: NA

KEGG:

id description
K12015 TRIM39; tripartite motif-containing protein 39

RNA

RNA id representative length rna type GC content exon number start site end site
TU74367 False 615 lncRNA 0.35 2 11272200 11360044
XM_026936766.2 True 2105 mRNA 0.43 8 11272358 11279248
XM_034303237.1 False 1981 mRNA 0.43 8 11266384 11279248

Neighbor

gene id symbol gene type direction distance location
homezb LOC108267927 coding downstream 2294 11258688 ~ 11264090 (-)
tinf2 LOC108267930 coding downstream 3318 11244771 ~ 11263066 (-)
LOC113540349 LOC108267946 coding downstream 26915 11233048 ~ 11239469 (-)
efs LOC108267924 coding downstream 35187 11217786 ~ 11231197 (-)
acin1b acin1,LOC108267949 coding downstream 49154 11192532 ~ 11217230 (-)
ccdc166 NA coding upstream 17785 11377829 ~ 11381919 (-)
syt4 syt4,LOC107691948,LOC107562593,LOC107742284,LOC107668880 coding upstream 66254 11426298 ~ 11432252 (-)
LOC113540344 LOC108267931,LOC108267738,LOC108267932,LOC108267740,LOC108267739,LOC108267937 coding upstream 149687 11509731 ~ 11519651 (-)
rab39bb rab39b,LOC103045353,LOC107742286,LOC107753937,LOC107691951,LOC107562605,LOC103034714 coding upstream 262841 11622885 ~ 11626845 (-)
si:dkey-172j4.3 LOC108434852,LOC108267497,LOC107753941,LOC107742290 coding upstream 357301 11717345 ~ 11796600 (-)
LOC117596980 NA non-coding downstream 183372 11080531 ~ 11083012 (-)
G62504 LOC108267929,LOC108261535 non-coding downstream 191681 11042345 ~ 11074703 (-)
G62469 LOC108267929 non-coding downstream 312640 10926840 ~ 10953744 (-)
G62183 NA non-coding downstream 694024 10572155 ~ 10572360 (-)
G62167 NA non-coding downstream 731962 10534073 ~ 10534422 (-)
G62735 LOC108261673,LOC108267931,LOC108267938,LOC108267738,LOC108267739,LOC108267740,LOC108267935,LOC108267932 non-coding upstream 5211 11365255 ~ 11366181 (-)
G62734 LOC108267738,LOC108267739,LOC108267931,LOC108267241,LOC108267938,LOC108261673,LOC108267740,LOC108267935 non-coding upstream 81073 11441117 ~ 11471047 (-)
G62791 NA non-coding upstream 91394 11451438 ~ 11547288 (-)
LOC117596982 NA non-coding upstream 100026 11460070 ~ 11463038 (-)
G62813 LOC108267932,LOC108267938,LOC108267738,LOC108267937,LOC108267241,LOC108267931,LOC108267739,LOC108267740,LOC108267929 non-coding upstream 197540 11557584 ~ 11607947 (-)
mrpl52 mrpl52 other downstream 84015 11177685 ~ 11182369 (-)
nedd8 nedd8,LOC107588156,LOC108440049,LOC107562413,LOC103040682,LOC103358415,LOC106608856 other downstream 356173 10907025 ~ 10910211 (-)
svep1 svep1 other downstream 402886 10775252 ~ 10863498 (-)
poln poln,LOC107563414 other downstream 518738 10693257 ~ 10747646 (-)
gba2 gba2,LOC107749818,LOC107741462 other downstream 704378 10538245 ~ 10562006 (-)
si:dkey-183c6.7 LOC108267942 other upstream 41983 11402027 ~ 11415897 (-)
LOC117597110 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267938,LOC108261673,LOC108267241,LOC108267937,LOC108267740,LOC108267935 other upstream 164782 11524826 ~ 11535243 (-)
htr2cl1 LOC108267122,LOC108434824 other upstream 502581 11862625 ~ 11966903 (-)
si:dkey-165a24.9 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC105903083,LOC107572570,LOC107753961,LOC107659726,LOC107588125 other upstream 886918 12246962 ~ 12249754 (-)
LOC113539775 NA other upstream 912174 12272218 ~ 12277669 (-)

Expression


Co-expression Network