LOC117597110 (LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267938,LOC108261673,LOC108267241,LOC108267937,LOC108267740,LOC108267935)


Basic Information

Item Value
gene id LOC117597110
gene name LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267938,LOC108261673,LOC108267241,LOC108267937,LOC108267740,LOC108267935
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11524826 ~ 11535243 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU74378
CTCCAGCAGTCTCCTGTCTGAAGAGCAGCTGCTGTGTTCGATCTGTCTGGATGTGTTCACTGATCCAGTCACCACTCCATGTGGACACAACTTCTGCAAGAGCTGCCTTTCACAGTGCTGGGAGAAGAGTCAACACTGTCACTGTCCATTATGTAAAGACAACTTCACCAAGAGACCTGAACTGAAGATTAATACAACACTGAGAGAGGTTGCAGATCACTTCAAGAAGAAAAGTGGTCCTGACAAACCTGAGGTTCTTTGTGACGCCTGCACTGGAGAGAAGCTGAAGGCCCTGAAATCCTGTCTGGATTGTGTTCTGACTTTGTGTAAGTCTCATCTAGAGCCTCATAACCATGTTCCAAGACTTAAGAGGCACAAACTAATAAACCCtgtggagaacctggaggactACATATGCCAGAAACATGATAGAGCTCTGGAGCTGTTCTGTAGAGATgatcagacgtgtgtgtgtcagttctgCACTGAAGGAGACCACAAGAATCACAACACTGTTCCTGTAGAggaggagagcagagagaggaagGCACAGCTGGggaaaacacagacagatgtgCAGCAGATGATTCAGGACCGAATGAAGAAGATCCAAGAAATCAAACACTCAGTAGAGCTCAGCAAAAgaagcacagagaaagagaaagcagacaGTGTTGAAGTCTTCACTGCTCTGATTCGCTCCATTGAGAGAAGTCAGGCTGAGCTGCTCGAGGTGAtggaggagaagcagaaagCAGCAGAGAGGCAGGCTGAAGGACTCATTAAAGAGCTGGAGCAGGAAATCACTGTGCTAAAGAGGAGAGacactgagctggagcagctctcacacactgaggAGCATCTCCACCTCCT
>XM_034303833.1
ATGACACCCCAACAAGTGCCTTTAGACTTCAGCTTTGCTCGTAACTCCAGCAGTCTCCTGTCTGAAGAGCAGCTGCTGTGTTCGATCTGTCTGGATGTGTTCACTGATCCAGTCACCACTCCATGTGGACACAACTTCTGCAAGAGCTGCCTTTCACAGTGCTGGGAGAAGAGTCAACACTGTCACTGTCCATTATGTAAAGACAACTTCACCAAGAGACCTGAACTGAAGATTAATACAACACTGAGAGAGGTTGCAGATCACTTCAAGAAGAAAAGTGGTCCTGACAAACCTGAGGTTCTTTGTGACGCCTGCACTGGAGAGAAGCTGAAGGCCCTGAAATCCTGTCTGGATTGTGTTCTGACTTTGTGTAAGTCTCATCTAGAGCCTCATAACCATGTTCCAAGACTTAAGAGGCACAAACTAATAAACCCtgtggagaacctggaggactACATATGCCAGAAACATGATAGAGCTCTGGAGCTGTTCTGTAGAGATgatcagacgtgtgtgtgtcagttctgCACTGAAGGAGACCACAAGAATCACAACACTGTTCCTGTAGAggaggagagcagagagaggaagGCACAGCTGGggaaaacacagacagatgtgCAGCAGATGATTCAGGACCGAATGAAGAAGATCCAAGAAATCAAACACTCAGTAGAGCTCAGCAAAAgaagcacagagaaagagaaagcagacaGTGTTGAAGTCTTCACTGCTCTGATTCGCTCCATTGAGAGAAGTCAGGCTGAGCTGCTCGAGGTGAtggaggagaagcagaaagCAGCAGAGAGGCAGGCTGAAGGACTCATTAAAGAGCTGGAGCAGGAAATCACTGTGCTAAAGAGGAGAGacactgagctggagcagctctcacacactgaggAGCATCTCCACCTCCTACAGGTCAgtgttcctctctctgctccctCACACACCAAGAACTGGACTGAGATCAGTATTAACACTGATCTGAGTGGGGACACTGTGAGGACAGCTCTGTCTCAGCTTCAGCAGACTCCGAATGAGAAACTCACTAAAACACTCAATGACAAGTTAAAGGAAACAGTTTCCACAGAACTGAAGAGGATTCAGCAGTATGCAGGTACAtggGACGTGACTCGATCCGATCCTGATACAGCTCATCCCAATCTCATCCTGTCTGCTGATGGAAAACAAGTGACAGACGGAGACACACGACAGGATCTCCCTGATACACCACAGAGGTTTACttattgtgtctgtgttttgggAAAGGAGAGTTTCTCCTCAGGGAGATTCTATTATGAGGTGCAGGTCAGAGAGAAAACTGATTGGGATCTCGGAGTCGCCACAGAGTCCAGTAACAGGAAGGGGAAGATTATACTGAGACCTCAGAATGGATTCTGGACTGTCGGACTGAGGGATGAGAATCAGTATGAGGCTTGTGCTGATCCTGATGTCCCcctcacactgagagagaaggtGGAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTCTGGTCTCCTTTTATGATGTGAAGTCCAGCTCTCATATCTACTCTTTCACTGGTCAGTCTTTTACTGAGAAACTCTATCCATACTTCAGTCCTTGGATAAATGAAGGAGGTAAAAATTCAGCACCGCTGATCATCTCTCctgtatttaacactgaatgaaTTTTCACCTCACAGATTTAATCATCTATTAAATGCtgagaataaaagaaatattttacttttctgGTGAATTTTAGAAATACATATTCCCTTTTAAAGTGctgtacagtttattttaatacctggggtttgttttttaaatttaatcctACAGTctgttttttacacattatgatTGTGGAACTTTGTCATtacaaatcaaatattaataaagaccATTTACAGTTCA

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM39-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74378 False 873 TUCP 0.48 3 11533764 11535013
XM_034303833.1 True 1906 mRNA 0.45 7 11524826 11535243

Neighbor

gene id symbol gene type direction distance location
LOC113540344 LOC108267931,LOC108267738,LOC108267932,LOC108267740,LOC108267739,LOC108267937 coding downstream 5175 11509731 ~ 11519651 (-)
syt4 syt4,LOC107691948,LOC107562593,LOC107742284,LOC107668880 coding downstream 92574 11426298 ~ 11432252 (-)
ccdc166 NA coding downstream 142907 11377829 ~ 11381919 (-)
LOC113538167 gmpr2,LOC108267954,LOC107753927,LOC107668803,LOC101077150 coding downstream 177238 11342706 ~ 11347588 (-)
LOC117597109 LOC108267929,LOC108261535 coding downstream 183643 11320035 ~ 11341183 (-)
rab39bb rab39b,LOC103045353,LOC107742286,LOC107753937,LOC107691951,LOC107562605,LOC103034714 coding upstream 87642 11622885 ~ 11626845 (-)
si:dkey-172j4.3 LOC108434852,LOC108267497,LOC107753941,LOC107742290 coding upstream 182102 11717345 ~ 11796600 (-)
zgc:109889 zgc:109889,LOC108267204,LOC108434857,LOC105007310,LOC107742291,LOC107562726 coding upstream 299125 11834368 ~ 11860113 (-)
ccnb3 LOC108267136,LOC108410408 coding upstream 533800 12069043 ~ 12083211 (-)
clcn5b LOC108267828,LOC108434858,LOC107557080,LOC107715429,LOC107733513 coding upstream 590578 12125821 ~ 12148492 (-)
G62734 LOC108267738,LOC108267739,LOC108267931,LOC108267241,LOC108267938,LOC108261673,LOC108267740,LOC108267935 non-coding downstream 53779 11441117 ~ 11471047 (-)
LOC117596982 NA non-coding downstream 61788 11460070 ~ 11463038 (-)
G62735 LOC108261673,LOC108267931,LOC108267938,LOC108267738,LOC108267739,LOC108267740,LOC108267935,LOC108267932 non-coding downstream 158645 11365255 ~ 11366181 (-)
G62754 NA non-coding downstream 163397 11321370 ~ 11361429 (-)
LOC117596984 NA non-coding downstream 166272 11350697 ~ 11358554 (-)
G62813 LOC108267932,LOC108267938,LOC108267738,LOC108267937,LOC108267241,LOC108267931,LOC108267739,LOC108267740,LOC108267929 non-coding upstream 22341 11557584 ~ 11607947 (-)
G62823 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267938,LOC108267935,LOC108267241 non-coding upstream 35742 11570985 ~ 11605575 (-)
G62830 NA non-coding upstream 74305 11609548 ~ 11609774 (-)
G62831 NA non-coding upstream 74678 11609921 ~ 11610121 (-)
G62832 NA non-coding upstream 75877 11611120 ~ 11611657 (-)
si:dkey-183c6.7 LOC108267942 other downstream 108929 11402027 ~ 11415897 (-)
LOC113540328 LOC108267738,LOC108267931,LOC108267739,LOC108267932,LOC108267933,LOC108267740,LOC108261673,LOC108267241,LOC108267937,LOC108267929 other downstream 164782 11266384 ~ 11360044 (-)
LOC113538166 LOC108267929,LOC108261535,LOC108267954,LOC103358416,LOC107753927 other downstream 211210 11286449 ~ 11313616 (-)
mrpl52 mrpl52 other downstream 342457 11177685 ~ 11182369 (-)
nedd8 nedd8,LOC107588156,LOC108440049,LOC107562413,LOC103040682,LOC103358415,LOC106608856 other downstream 614615 10907025 ~ 10910211 (-)
htr2cl1 LOC108267122,LOC108434824 other upstream 327382 11862625 ~ 11966903 (-)
si:dkey-165a24.9 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC105903083,LOC107572570,LOC107753961,LOC107659726,LOC107588125 other upstream 711719 12246962 ~ 12249754 (-)
LOC113539775 NA other upstream 736975 12272218 ~ 12277669 (-)
tmem256 tmem256,LOC107659713,LOC107564775,LOC107560291 other upstream 949480 12484723 ~ 12489562 (-)
acap1 acap1,LOC107731905,LOC107683535,LOC107595305,LOC107675497 other upstream 1750756 13285999 ~ 13308478 (-)

Expression


Co-expression Network