G62754


Basic Information

Item Value
gene id G62754
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 11321370 ~ 11361429 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU74393
ttttttcagtgttcacaaattcagattgaataattcagttttcagatATTCAGAAATCTGTATTCAGGTTGCTAATTTCAGAGCTCAaattcaaccaatcaaattcagGCTGCAAAATTCAACACAGAAAAACCTCAAGTTTAACATCCGGGTTACTCAGGGCTAGGCAAAGGCAATCGAGCCTGGAATGCGTTGTTACCGTTTTGCATCTCCTGTCATTAAATGCTTCCCCCTCTCGGGAGCGCGCGCCTGCATCACTATAGCAACAGAACAGTGAGAAGGCAATCATGGATTTGAATCagattaataaagaaatgtgtCTTATGAGTAAACTTTTGAGTAAATCACTGTTCTTTACTCTTCACTGTGCAGCTTTATGATCTGATTGAATTCAGCTTCACTTGAAA

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU74393 True 407 lncRNA 0.39 2 11321370 11361429

Neighbor

gene id symbol gene type direction distance location
homezb LOC108267927 coding downstream 57280 11258688 ~ 11264090 (-)
tinf2 LOC108267930 coding downstream 58304 11244771 ~ 11263066 (-)
LOC113540349 LOC108267946 coding downstream 81901 11233048 ~ 11239469 (-)
efs LOC108267924 coding downstream 90173 11217786 ~ 11231197 (-)
LOC113540752 NA coding downstream 106948 11214322 ~ 11214422 (-)
ccdc166 NA coding upstream 16400 11377829 ~ 11381919 (-)
syt4 syt4,LOC107691948,LOC107562593,LOC107742284,LOC107668880 coding upstream 64869 11426298 ~ 11432252 (-)
LOC113540344 LOC108267931,LOC108267738,LOC108267932,LOC108267740,LOC108267739,LOC108267937 coding upstream 148302 11509731 ~ 11519651 (-)
rab39bb rab39b,LOC103045353,LOC107742286,LOC107753937,LOC107691951,LOC107562605,LOC103034714 coding upstream 261456 11622885 ~ 11626845 (-)
si:dkey-172j4.3 LOC108434852,LOC108267497,LOC107753941,LOC107742290 coding upstream 355916 11717345 ~ 11796600 (-)
LOC117596980 NA non-coding downstream 238358 11080531 ~ 11083012 (-)
G62504 LOC108267929,LOC108261535 non-coding downstream 246667 11042345 ~ 11074703 (-)
G62469 LOC108267929 non-coding downstream 367626 10926840 ~ 10953744 (-)
G62183 NA non-coding downstream 749010 10572155 ~ 10572360 (-)
G62167 NA non-coding downstream 786948 10534073 ~ 10534422 (-)
G62735 LOC108261673,LOC108267931,LOC108267938,LOC108267738,LOC108267739,LOC108267740,LOC108267935,LOC108267932 non-coding upstream 3826 11365255 ~ 11366181 (-)
G62734 LOC108267738,LOC108267739,LOC108267931,LOC108267241,LOC108267938,LOC108261673,LOC108267740,LOC108267935 non-coding upstream 79688 11441117 ~ 11471047 (-)
G62791 NA non-coding upstream 90009 11451438 ~ 11547288 (-)
LOC117596982 NA non-coding upstream 98641 11460070 ~ 11463038 (-)
G62813 LOC108267932,LOC108267938,LOC108267738,LOC108267937,LOC108267241,LOC108267931,LOC108267739,LOC108267740,LOC108267929 non-coding upstream 196155 11557584 ~ 11607947 (-)
LOC113538166 LOC108267929,LOC108261535,LOC108267954,LOC103358416,LOC107753927 other downstream 7754 11286449 ~ 11313616 (-)
mrpl52 mrpl52 other downstream 139001 11177685 ~ 11182369 (-)
nedd8 nedd8,LOC107588156,LOC108440049,LOC107562413,LOC103040682,LOC103358415,LOC106608856 other downstream 411159 10907025 ~ 10910211 (-)
svep1 svep1 other downstream 457872 10775252 ~ 10863498 (-)
poln poln,LOC107563414 other downstream 573724 10693257 ~ 10747646 (-)
si:dkey-183c6.7 LOC108267942 other upstream 40598 11402027 ~ 11415897 (-)
LOC117597110 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267938,LOC108261673,LOC108267241,LOC108267937,LOC108267740,LOC108267935 other upstream 163397 11524826 ~ 11535243 (-)
htr2cl1 LOC108267122,LOC108434824 other upstream 501196 11862625 ~ 11966903 (-)
si:dkey-165a24.9 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC105903083,LOC107572570,LOC107753961,LOC107659726,LOC107588125 other upstream 885533 12246962 ~ 12249754 (-)
LOC113539775 NA other upstream 910789 12272218 ~ 12277669 (-)

Expression


Co-expression Network